Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2628 196 7e-45 seq2489 194 2e-44 >seq2628 Length=67642 Score = 196 bits (216), Expect = 7e-45 Identities = 629/988 (64%), Gaps = 121/988 (12%) Strand=Plus/Minus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATA-TAT 39383 ||| |||||||| || || ||| || ||||| || || || ||| ||||| || ||| Sbjct 41901 TTTCTGGTATTCTCCTACTCGTCGTTCAAAAAAGTTTGTCTTTCCT-CCAATACTAATAT 41843 Query 39384 TTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTA-ATTCTGAA 39442 | |||||||||||||| |||||| || ||| || ||||| ||| | ||| || | Sbjct 41842 TATCCATGAAATCAAAGGGATTATCTGAATTGTAAACTTTTTGTTGTCCAAGATTTTGCA 41783 Query 39443 ATCAATCTA-TCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTAT 39501 | || || || |||||||||| || ||| ||| | ||| ||||| || || Sbjct 41782 A--AAGGTAATCACCAACAAATTCAATATATTGACACATTAAATCATGGTTCATGCCGAT 41725 Query 39502 GAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTAT 39561 ||| |||| || | ||| || |||| ||| |||| ||| || | || || || || || Sbjct 41724 TAGTCTAACGGGCAAAGCGTCAGTTAAAAATTCTTGTTCAATTGCAACAGCTTCAGTAAT 41665 Query 39562 TATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGC 39621 ||| |||||| | || | | ||| | | |||||| | | |||| || || || Sbjct 41664 TATACGTGTTACAAGTTCTGCCATAGGTTTAACCTTTAAATGATCATACATCAAACAAGC 41605 Query 39622 GAAGTCACAATGTAGGCCCT----------------------------------CATCTC 39647 ||||||||||| | |||| |||||| Sbjct 41604 AAAGTCACAATGCAACCCCTGAAAGATATATAAACTAAGAAATAATGAATACCTCATCTC 41545 Query 39648 TACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAA 39707 ||| || | |||||| ||| |||||||| |||||||| || ||||| | ||||| Sbjct 41544 GACTGATGAGTTCGTTGCTAAAAGTGAGTCCTTTCATTAGACATCGTTTTTTCAACCAAA 41485 Query 39708 ATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTC 39767 | |||| ||| || || || |||||||| || |||||||| || |||||||| |||| || Sbjct 41484 AAATGGAAGCGAATGAACCTGAAAAGAAAATTCCTTCTACAGCAGCAAATGCTACAACTC 41425 Query 39768 TCTCTCCGTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTA 39827 | | ||| | |||| ||||| ||| |||||||| || || || || Sbjct 41424 TATGAGAGTATGGACTGTCATCCCCAATCCATTTCAATGCCCAATTTGCCTTTTTTCGTA 41365 Query 39828 CACAAGGCATTGTTTCTATAGCATTAAAGA---GAT------------------------ 39860 || ||||| || || || ||||| || | ||| Sbjct 41364 TGCAGGGCATCGTATCGATTGCATTGAACAAACGATTCCTATTTAAATTGCAAAATTATA 41305 Query 39861 -------AATGTTT------TTCATCACTATCTTTAACATATGTATCTATTAACAGACTA 39907 ||| ||| ||||||| | ||||| | || || || || | || ||| Sbjct 41304 CAGTAGAAATATTTATACTTTTCATCATTTTCTTTTATGTAAGTGTCAATCAGCAAACTG 41245 Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTC- 39966 |||||||| || || || ||||||||| || ||||| | ||||||||| | ||||| Sbjct 41244 TACATTTCCGAGTGAATATTTTCAATCATTATTTGAAAACTGTAAAAACAACGAGCTTCT 41185 Query 39967 AGTAATTT------GT------ACCT--CTG---------AA---------CA-----AA 39989 | || ||| || |||| ||| || || || Sbjct 41184 AATACTTTAACATCGTTTATAAACCTTTCTGCCTAATTTTAATTATTTTTTCATTTTTAA 41125 Query 39990 ATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACAT 40049 | || | |||| ||||||||||| || ||||| || || |||||||| ||||| || | Sbjct 41124 AACTATTTACCAAGTTTTCATTCACGATGCCATCGCTTGCTGCAAAAAAAGCCAAAACGT 41065 Query 40050 GTTTAATAAAATATTTTTCATCGGGTGTCAATTTA---TTCCAGTCATTGATATCTTTTG 40106 |||||||||||| |||| ||| | |||||| ||||| ||| | || | Sbjct 41064 GTTTAATAAAATGCCTTTCGTCGTCATTTAATTTATCGTTCCAATCAGAAACGTCATGGC 41005 Query 40107 ATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATA 40166 || ||| ||||| |||| ||||||||| || || |||||||||||||||| ||||| | Sbjct 41004 TTAAATCAACTTCATCAGTTGTCCAAAAAGAGGCTACTGCCTTTTTGTACATTTTCCAAA 40945 Query 40167 TATCACGATATTGTATTGGAAAAATAAC 40194 |||| |||| || ||||| || || Sbjct 40944 GATCATCGTATTTAATGGGAAACATGAC 40917 >seq2489 Length=37580 Score = 194 bits (214), Expect = 2e-44 Identities = 324/469 (69%), Gaps = 21/469 (4%) Strand=Plus/Minus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || ||||| || | || ||| ||||| || || |||| ||| |||| ||| ||| Sbjct 25818 GCAGGTTTAGTTCTTAAATAATACATGCCAGTCTTCAAACCCTTTTTCCAAGTGTAAAAA 25759 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || | |||||| | ||| | |||| ||||| |||||||||||||| ||||||||| Sbjct 25758 TGTAAACTTGTCAATTTAGCATAATTTGGACTTTGAATATGAATATTCATAGATTGACTT 25699 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 ||||| || || ||||||| || ||||| | |||||| || || || |||||| Sbjct 25698 TGATCTATATAAATAGCTCTATCAGCTGCCATATCTATAATTAATTTCTGTGGTATTTCC 25639 Query 68575 CAAATAGTCT--TAAAAATC----------TGTTTGATATCATCTGGAAGGCTCGTATTT 68622 || | ||| | || ||||| || | || ||||| || ||| | Sbjct 25638 CATACAGTTTTGTACAAATCCTTCAATTCTTGGCTAATTTCATC---AA------TATGT 25588 Query 68623 TGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTC 68682 ||||| || ||| | | ||||| | | |||| | || | |||||| | | Sbjct 25587 TGAATTGAACCATAACCTGATATCAGTTTATTTCTCATGGTTTTATTCCAAAGACCTAAT 25528 Query 68683 TCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTA 68742 | |||||| |||| | | ||||| ||| |||| ||||||||| |||||||| || | | Sbjct 25527 TGAGTTAAATCTCTCAATAAATGCGAATTGACTACTTGAAATTCACCAGATAAAACCCGA 25468 Query 68743 CGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCA 68802 ||| ||||| ||||| ||| ||| ||| | ||||| |||||||| | ||||||||| Sbjct 25467 CGAACGTAAAGGTTACTTGTAAATGCTTCAATTGATTCGTTATTTCCTAAAATTTGAGCC 25408 Query 68803 GTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCAT 68851 ||||| || || |||||||||| | || ||| |||||||| ||||| Sbjct 25407 GTTGACGCTGTAGGCATAGGTGATAACAGCAAAGAATTTCTAACACCAT 25359 Score = 187 bits (206), Expect = 3e-42 Identities = 317/457 (69%), Gaps = 2/457 (0%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || |||| || ||||||||||||||||||||| || | ||||||||||| || | || | Sbjct 23381 TCAAATTTTTCACCCCAAACATCATCCAATCCACGAAACTCATTTGGACAAATAAGTGTC 23322 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AA 69635 || ||||| | | || ||| ||||||| | ||| || ||||| | || ||| || Sbjct 23321 CAATTTTCATCTTTTTCTACACGTCTCATAAACAAATCAGGTATCCACAATGC-ATAGAA 23263 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 | |||||| ||| | |||| | | || |||| | | ||||| || | Sbjct 23262 TAAATCTCTCGTTTTGGTTTCATTAGAACCAATATTAGTGCGCAATGTAAGAAAATCAAA 23203 Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCC 69755 |||||||| |||||| ||||||| ||| || || || |||| |||| ||| || || || Sbjct 23202 AATATCAGCATGCCAAGGTTCTAAATAAATGGCGATTGCTCCGGGTCTTTTGTTACCACC 23143 Query 69756 CTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGA 69815 || |||| |||| || ||| | | | |||| | ||| |||| ||| ||||| || Sbjct 23142 TTGGTCTACATATCGAGCTGTGGCGTCAAAAACTCGTAACATAGGAACAATTCCATTTGA 23083 Query 69816 TTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACC 69875 | | ||||| ||||| |||||||| || | | |||||| | ||| | || Sbjct 23082 TGTTCCATTCGTTCCTTTTATATAACTACCCTTGGATCGAATACAATGTATATTAACTCC 23023 Query 69876 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTC 69935 ||||| || || | || || |||||||| || || | ||||| || || || || || Sbjct 23022 GATTCCACCAGCACTCTTGGAAATTAGAGCGCATTGTCTTAATGTATCGTAAATTCCTTC 22963 Query 69936 TATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| ||||| |||| |||||||||| || ||| Sbjct 22962 AATGCTGTCATCCTTCATAGTAAGAAGAAAGCAACTA 22926 Score = 122 bits (134), Expect = 1e-22 Identities = 223/323 (69%), Gaps = 9/323 (3%) Strand=Plus/Minus Query 69154 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTA 69213 ||||||| |||||||||||| |||||||||||||| || || ||| ||| | |||| | Sbjct 24656 TCTGGAACAGGATAATAATTGATATCTATAATTTTGTTGAGGTTTTTGACAATGACTTGA 24597 Query 69214 ACCACGTCCTTT--AGTTTGAGAAAATCAAATCGTCCATCTATAACAAACATATTCAGT- 69270 | | |||| | ||| ||||||||| | |||| || ||||| ||| | Sbjct 24596 GTAA--TTCTTTCCAATTTTTTAAAATCAAACTCTTTATCTTTAG-AAACAAATTTTGGT 24540 Query 69271 ---GCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATC 69327 || | ||||| | ||| || || || || | || ||| | ||||| ||| || Sbjct 24539 AAAGCAATGGATGCCAAATTGCAGACCGCAGTTTCGTCAGCATTCGAATATTCTATAATT 24480 Query 69328 TCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTA 69387 ||||||||||||||||| || || ||||| || | ||||||||||| || | || Sbjct 24479 TCTGTACATAGATTACTGCACTTTATAGTTCCAACGTTTTGCTGATTTGATTTACTATTG 24420 Query 69388 CAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGAT 69447 || || ||||| || | ||| | || ||| |||||||| || || | ||||||| Sbjct 24419 CATGCATCCTTATACAACATATATGGTACACCTGTTTCAATTTGTGAATTTATAATAGCG 24360 Query 69448 TTCCAAACGACCCTAGCATTTAT 69470 | ||| | || || || ||||| Sbjct 24359 TGCCATAAAACTCTTGCTTTTAT 24337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686878576012800