Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3020 190 2e-43 seq1671 185 7e-42 seq2628 118 8e-22 seq3219 111 1e-19 >seq3020 Length=37895 Score = 190 bits (210), Expect = 2e-43 Identities = 446/667 (67%), Gaps = 7/667 (1%) Strand=Plus/Plus Query 40650 TCAATATTTGGATGTCAAAATAGATACAATTTGAGAAATCAGTTT---CCGTTGCTAACT 40706 |||||||||||| ||| ||| ||| ||||||| ||| || || | | ||| Sbjct 24463 TCAATATTTGGAGCACAATCTAGGTACGATTTGAGTAATGGTGTTATACCAGTTTTGACT 24522 Query 40707 ACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGGTTTATCAAAGGTTGT 40766 |||||| | || |||| ||| ||| |||||| |||| ||| |||| || || Sbjct 24523 ACAAAACGCGTATTCTGGAGAGGAGTTGTAGAAGAGTTGTTGTGGATTATAGCGGGATGC 24582 Query 40767 ACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAATGCGCACAGTTCTAAA 40826 || ||| |||| |||| || | || || | |||||| || | | | |||| | Sbjct 24583 ACCAATTCTAATGTATTAACAAATCGAAATGTTAAAATTTGGGATCAGAATGGGTCTAGA 24642 Query 40827 ACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTAT 40886 || |||| || ||||||| ||||||| | |||||| | ||||| || ||| Sbjct 24643 GAATTTTTGGATAATTTAGGATTCAAAGATAGAAAAACTGGTGATTTAGGTCCAGTGTAT 24702 Query 40887 GGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTACTC-TGATTATACCAA 40945 |||||||| | | | ||||| || || ||||| | || |||| | | ||||| || Sbjct 24703 GGATTTCAATGGAGGCATTTCGGTGCTAAATACAAAAC-ATGTGATGATAATTATGATAA 24761 Query 40946 TAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAATCCGATCCCGATAGCCG 41005 ||||| |||||||| | |||||| || |||||| ||| || |||||| | Sbjct 24762 ACAAGGAGTGGATCAACTGGCAAATGTTATACATTTAATTAAAAACGACCCGGATAGCAG 24821 Query 41006 ACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTG 41065 | || |||| | | |||||| | | ||| | | ||||| || || || || Sbjct 24822 GAGAATTGTATTATCTTCATGGAACGCTATGGATTTGCCGGATATGGCGTTACCCCCATG 24881 Query 41066 TCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAG 41125 |||| | ||||| || || ||||| ||| | | || ||||| || || ||| | Sbjct 24882 CCATTGTCTCTGTCAATTCTATGTTTGTAATAACAAGTTATCGTGTCAGTTATACCAACG 24941 Query 41126 ATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTA 41185 ||| | || |||||||| || ||||| || || || || || ||| |||| | || | Sbjct 24942 ATCTGCAGATATGGGACTTGGTGTCCCATTCAATATTGCTAGCTATTCTCTTTTAACTTT 25001 Query 41186 TATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGG 41245 |||| | || || |||| ||| |||||||||||||| ||||||| | ||||||| Sbjct 25002 TATGCTGGCTCATATTACTAATACTGAACCTGGTGAATTTATTCACACTATTGGAGATGC 25061 Query 41246 ACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGACC 41305 ||| |||| ||||||| | || || |||| | ||||| | ||| ||||| ||| Sbjct 25062 TCATGTTTATGTTAATCATGTTGAACCTTTAAAACAACAAATTGTTCGAGAACCT-TACC 25120 Query 41306 A-TTTCC 41311 | ||||| Sbjct 25121 AGTTTCC 25127 >seq1671 Length=56301 Score = 185 bits (204), Expect = 7e-42 Identities = 361/530 (68%), Gaps = 15/530 (3%) Strand=Plus/Plus Query 19352 TTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAAT 19411 |||| ||| |||| || || || |||||||| ||| | || | || || | ||| Sbjct 13085 TTTTACTTCATGGTCCCCCTGGAACGGGAAAAACGTTACTGGCACGCCAAATTGGAAAAA 13144 Query 19412 TACTTA---CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATG 19468 | | | | ||| ||||| |||||||||||||| ||| |||| ||| ||||||||| Sbjct 13145 TGTTGAACGCTAAAGAACCT---AAAATTGTAAATGGGCCTCAAATATTAGATAAATATG 13201 Query 19469 TAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAAC 19528 | || || |||||||| || || | |||||||| ||||| | || ||||| Sbjct 13202 TCGGAGCGTCAGAAGAAAACGTTAGAAAACTTTTTGCTGATGCTGAGGCTGATGAAAAAA 13261 Query 19529 GTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTA 19588 | || || ||| || | | || || || | |||||| | |||||||| |||| Sbjct 13262 AGTACGGAATAAACAGTCCTCTCAATATGATCATTTTTGATGAAATTGACGCAATTTGTA 13321 Query 19589 AGCAAAGAGGTTC--TG-GTGTAAATGGAGTACATG------ACACTGTTGTCAATCAAC 19639 | ||| | ||||| || ||| | || | ||| | || || | || |||| Sbjct 13322 AACAACGGGGTTCAATGAGTGGCACCGGTGGTAATGTAACGGATACAGTGATAAACCAAC 13381 Query 19640 TCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTA 19699 || | || ||||| |||||| | ||| | ||||||||||| || ||||||||||| | Sbjct 13382 TCTTAAGTAAGTTAGATGGTGTTGATCAATTAAATAATATTTTGGTCATTGGCATGACGA 13441 Query 19700 ATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCG 19759 ||||| | || | ||||||| |||||||| || || ||| |||| ||| | | | Sbjct 13442 ATAGATTAGACATGATAGACACTGCCTTATTGCGCCCTGGTAGGTTTGAACTTCACGTAC 13501 Query 19760 AAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCA 19819 |||| || ||||| |||||| ||||||| |||||||| || || |||||||| | Sbjct 13502 AAATAAATTTACCTGATGAAGGTGGACGGCAAGAAATTTTGAAAATTCATACATCCAAAT 13561 Query 19820 TGCGACAAAATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCA 19869 || | || ||| ||| | | |||||||| | ||| |||||||| Sbjct 13562 TGGCAATAAGCAACAAATTACACAAGAATGTAGATTTGGAACAAATTGCA 13611 >seq2628 Length=67642 Score = 118 bits (130), Expect = 8e-22 Identities = 238/360 (66%), Gaps = 45/360 (13%) Strand=Plus/Plus Query 43703 GTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCA 43762 ||| ||||||| ||| |||| |||| | ||| ||||||||||||| ||| || || Sbjct 40917 GTCATGTTTCCCATTAAATACGATGATCTTTGGAAAATGTACAAAAAGGCAGTAGCCTCT 40976 Query 43763 TTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGA---TTGCATTA 43819 ||||||||| | || ||||||||||| | | ||| | | |||||| | |||| Sbjct 40977 TTTTGGACAACTGATGAAGTTGATTTAAGCCATGACGTTTCTGATTGGAACGATAAATTA 41036 Query 43820 AA--ACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 || || || |||| |||||||| |||||||| |||||||| || ||||| | Sbjct 41037 AATGACGAC--GAAAGGCATTTTATTAAACACGTTTTGGCTTTTTTTGCAGCAAGCGATG 41094 Query 43878 GGATAGTCAATGAAAATTTGGT---TAGT------------------------------- 43903 | || || |||||||| ||||| |||| Sbjct 41095 GCATCGTGAATGAAAACTTGGTAAATAGTTTTAAAAATGAAAAAATAATTAAAATTAGGC 41154 Query 43904 ----CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAAT 43959 ||||| | || ||| || || |||||| || |||||||| | |||||||| Sbjct 41155 AGAAAGGTTTATAAACGATGTTAAAGTATTAGAAGCTCGTTGTTTTTACAGTTTTCAAAT 41214 Query 43960 TGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 || ||||||||||| ||||||||||||||| | ||||| || || ||||| ||||| Sbjct 41215 AATGATTGAAAATATTCACTCGGAAATGTACAGTTTGCTGATTGACACTTACATAAAAGA 41274 >seq3219 Length=15456 Score = 111 bits (122), Expect = 1e-19 Identities = 191/278 (69%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || ||||||||||| || || ||||| ||||| |||||||| || |||| ||| |||| Sbjct 1675 CCTAAAATTGTAAACGGACCGGAAATTTTAAACAAATATGTTGGAGAATCTGAATCAAAT 1734 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | || || |||| || || |||| || ||||| || || ||| || Sbjct 1735 ATTAGAAAATTATTTGAGGATGCAGAAGTTGATGAAAAAAAATTTGGTATAAAATCACCT 1794 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCT------ 19602 || ||||| ||||| | || ||| | || ||||| ||||| ||||||| || Sbjct 1795 TTACACATCATAATTTTTGACGAAATTGATGCAATTTGTAAAAAAAGAGGAACTGTTGGA 1854 Query 19603 GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 |||| ||| || |||| | ||| | |||||||| || || || ||||| || Sbjct 1855 GGTGGCTCTGGGGTCTATGATAGTGTAATTAATCAACTGTTGAGCAAGTTGGACGGGGTA 1914 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAA 19700 | ||| |||| |||||||| || ||||| |||||||| Sbjct 1915 GAACAATTGAACAATATTTTGGTAATTGGAATGACTAA 1952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397438949137600