Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2377 143 3e-29 seq1640 132 5e-26 >seq2377 Length=22370 Score = 143 bits (158), Expect = 3e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || |||||||| || || ||||| ||||| ||||| | | Sbjct 110 ATGCAAATTTTTGTTAAAACACTTACCGGAAAAACCATTACCCTTGAAGTTGAACCTAGC 169 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || || |||||||| || ||||| || |||||||||||||| Sbjct 170 GATACAATTGAAAATGTAAAAGCAAAAATTCAAGATAAGGAAGGGATTCCTCCAGACCAA 229 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||||||||||||||| ||| | || |||| | | | || |||||| Sbjct 230 CAACGTTTAATTTTTGCTGGTAAACAATTGGAAGATGGCAGAAGTTTGAGTGATTATAAT 289 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | || || ||||| ||| | ||| |||| Sbjct 290 ATTCAGAAAGAATCTACTTTGCATTTAGT 318 >seq1640 Length=44113 Score = 132 bits (146), Expect = 5e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| || || | || || ||||||||||||||||| |||||| | | Sbjct 43978 AATGCAAATATTTGTTAAAACTTTAACTGGAAAGACTATTACTCTTGAAGTTGAGCCTAG 44037 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| |||| | ||||| |||||||| || || ||||||||||||||||| || Sbjct 44038 TGATACTATTGAAAATGTTAAGGCGAAAATTCAAGATAAAGAGGGAATTCCTCCAGATCA 44097 Query 27525 GCAGCGTCTAATTTTT 27540 || ||| |||||||| Sbjct 44098 ACAACGTTTAATTTTT 44113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570285306342400