Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2377 125 6e-24 seq1640 96.9 3e-15 >seq2377 Length=22370 Score = 125 bits (138), Expect = 6e-24 Identities = 170/236 (72%), Gaps = 12/236 (5%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || ||||| || | ||||| |||||||| ||||| | Sbjct 110 ATGCAAATTTTTGTTAAAACACTTACCGGAAAAACCATTACCCTTGAAGTTGAACCTAGC 169 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| |||||||||||| || ||||| || || || || ||| Sbjct 170 GATACAATTGAAAATGTAAAAGCAAAAATTCAAGATAAGGAAGGGATTCCTCCAGACCAA 229 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA------CAGTTCGACCGTTTCCGAT 27161 || |||||||| | || || |||||||||||||| |||| || || ||| Sbjct 230 CAACGTTTAATTTTTGCTGGTAAACAATTGGAAGATGGCAGAAGTTTGA--GT----GAT 283 Query 27162 TACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || || || || || ||||| || || | ||| | ||||| || Sbjct 284 TATAATATTCAGAAAGAATCTACTTTGCATTTAGTACTGAGATTGAGAGGTGGAAT 339 >seq1640 Length=44113 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| |||||| | || || ||| |||||||||||||||| || || Sbjct 43979 ATGCAAATATTTGTTAAAACTTTAACTGGAAAGACTATTACTCTTGAAGTTGAGCCTAGT 44038 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || ||||||||||| ||||| || || || || |||||| Sbjct 44039 GATACTATTGAAAATGTTAAGGCGAAAATTCAAGATAAAGAGGGAATTCCTCCAGATCAA 44098 Query 27108 CAGCGTTTAAT 27118 || |||||||| Sbjct 44099 CAACGTTTAAT 44109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434899263590400