Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq3020 86.0 5e-12 >seq3020 Length=37895 Score = 86.0 bits (94), Expect = 5e-12 Identities = 126/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 118463 GTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATT 118522 |||| | || |||| ||||| | ||| ||||||||||| ||||| || || || |||| Sbjct 25096 GTTTTAAAGGTTCAACATGATTAACATAAACATGAGCATCTCCAATAGTGTGAATAAATT 25037 Query 118523 CACCAGGTGTAAGCCCT-GTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCT 118581 |||||||| | || | || | ||||| | ||| | || || | | ||||| || Sbjct 25036 CACCAGGT-TCAGTATTAGTAATATGAGCCAGCATAAAAGTTAAAAGAGAATAGCTAGCA 24978 Query 118582 ACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGA 118637 | ||| || || ||||| || ||||| ||||| |||| ||||| || || || || Sbjct 24977 ATATTGAATGGGACACCAAGTCCCATATCTGCAGATCGTTGGTATAACTGACACGA 24922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414459018945280