Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1640 86.0 4e-12 >seq1640 Length=44113 Score = 86.0 bits (94), Expect = 4e-12 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || || |||||||| | || ||||| || || ||||| |||||||| | Sbjct 43976 AAAATGCAAATATTTGTTAAAACTTTAACTGGAAAGACTATTACTCTTGAAGTTGAGCCT 44035 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || ||| |||||| | |||| | |||| || || ||||| || | || ||||| Sbjct 44036 AGTGATACTATTGAAAATGTTAAGGCGAAAA-TTCAAGATAAAGAGGGAATTCCTCCAGA 44094 Query 23727 TCAACAGCGTTTAATATTT 23745 |||||| |||||||| ||| Sbjct 44095 TCAACAACGTTTAATTTTT 44113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337995099388160