Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2377 105 2e-17 seq938 104 6e-17 >seq2377 Length=22370 Score = 105 bits (116), Expect = 2e-17 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 |||||| || | || | ||| |||||||| || | ||| ||||| |||| |||| || Sbjct 325 TCTCAGTACTAAATGCAAAGTAGATTCTTTCTGAATATTATAATCACTCAAACTTCTGCC 266 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | || || ||||| || || | ||||||||||| || ||||| |||||||| Sbjct 265 ATCTTCCAATTGTTTACCAGCAAAAATTAAACGTTGTTGGTCTGGAGGAATCCCTTCCTT 206 Query 225618 GTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 ||||| || |||||| || ||| ||| || || || | ||| || || | || | Sbjct 205 ATCTTGAAT-TTTTGCTTTTACATTTTCAATTGTATCGCTAGGTTCAACTTCAAGGGTAA 147 Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || || || || | ||||| | || | |||||| Sbjct 146 TGGTTTTTCCGGTAAGTGTTTTAACAAAAATTTGCAT 110 >seq938 Length=12008 Score = 104 bits (114), Expect = 6e-17 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||||||| ||| || ||||| || |||| || |||||||||||||||||||||| Sbjct 1738 CACTTCAATACATTGTACCTTACACTGGATGTGCCATTGGAGAATATTTTAGAGATAATG 1679 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACA 5116 | |||||||| | ||||| ||||||||||| |||||| Sbjct 1678 GGAAACATGCACTCATCATTTACGATGATTTGTCTAAACA 1639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192477416842880