Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq2377 116 3e-21 >seq2377 Length=22370 Score = 116 bits (128), Expect = 3e-21 Identities = 171/239 (72%), Gaps = 5/239 (2%) Strand=Plus/Minus Query 101002 ATTACTATTGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATT 101061 |||| ||| || |||| |||||| | || | |||||||| |||||||| |||||||| Sbjct 345 ATTAGCATT-CCACCTCTCAATCTCAGTACTAAATGCAAAGTAGATTCTTTCTGAATATT 287 Query 101062 GTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTG 101121 ||||| || | || || ||||||||||||||| || ||| | || | | |||||| Sbjct 286 ATAATCACTCAAACTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATTAAACGTTGTTG 227 Query 101122 GTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGT 101181 |||| || | ||||| || || ||||||| ||| |||| | | || || | Sbjct 226 GTCTGGAGGAATCCCTTCCTTATCTTGAATTTTTGCTTTTACATTTTCAATTGTATCGCT 167 Query 101182 GGACGTT--GTTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 | ||| ||| | |||||| ||||| || || | |||||||| |||||||||||| Sbjct 166 --AGGTTCAACTTCAAGGGTAATGGTTTTTCCGGTAAGTGTTTTAACAAAAATTTGCAT 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409643225551680