Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2628 123 2e-23 >seq2628 Length=67642 Score = 123 bits (136), Expect = 2e-23 Identities = 624/1010 (62%), Gaps = 146/1010 (14%) Strand=Plus/Minus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 |||||| |||| |||||||| |||||| ||| || || || || || ||| | | Sbjct 41909 ACACCAGATTTCTGGTATTCTCCTACTCGTCGTTCAAAAAAGTTTGTCTTTCCTCCAATA 41850 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTT------CACAC 4361 |||||| ||||| |||||||| |||||| || |||||| ||||| || Sbjct 41849 CTAATATTATCCATGAAATCAAAGGGATTATCTGAATTGTAAACTTTTTGTTGTCCAAGA 41790 Query 4362 TTTAGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAG 4421 ||| | | | | | |||| | | |||||||| ||||| || | ||| | || | Sbjct 41789 TTTTG--CAAAAGGTAATC----ACCAACAAATTCAATATATTGACACATTAAATCATGG 41736 Query 4422 TTAATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACG 4481 || || || |||| ||| || || | |||| || ||||| |||||||| || | || Sbjct 41735 TTCATGCCGATTAGTCTAACGGGCAAAGCGTCAGTTAAAAATTCTTGTTCAATTGCAACA 41676 Query 4482 GCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTA---TTTACTAAGTATCCA 4538 ||||| || |||||| | ||| ||| |||||| |||| || ||| | Sbjct 41675 GCTTCAGTAATTATACGTGTTACAAGTTCTGCCATAGGTTTAACCTTTA--AATGATC-A 41619 Query 4539 AACAATAAACACGCAAAATCACAATGCAAACCTT-------------------------- 4572 ||| ||||| ||||| ||||||||||| || | Sbjct 41618 TACATCAAACAAGCAAAGTCACAATGCAACCCCTGAAAGATATATAAACTAAGAAATAAT 41559 Query 4573 --------CGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCT 4624 | |||| || || |||||||| ||| || | ||| ||||| || || Sbjct 41558 GAATACCTCATCTCGACTGATGAGTTCGTTGCTAAAAGTGAGTCCTTTCATTAGACATCG 41499 Query 4625 CTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGC 4684 ||||| | |||||| || | || ||||| || |||||||| || |||||||| || || Sbjct 41498 TTTTTTCAACCAAAAAATGGAAGCGAATGAACCTGAAAAGAAAATTCCTTCTACAGCAGC 41439 Query 4685 AAACGCTACTAATC---GGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGC 4741 ||| ||||| | || | || | | | ||| | | | ||||||||| ||||| Sbjct 41438 AAATGCTACAACTCTATGAGA---GTATGGACTGTCATCCCC---AATCCATTTCAATGC 41385 Query 4742 CCAGTTAGC-TTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT-------------- 4786 ||| || || ||||||| || ||| || || || | || || || Sbjct 41384 CCAATTTGCCTTTTTTCGTAT-GCAGGGCATCGTATCGATTGCATTGAACAAACGATTCC 41326 Query 4787 -----AAAT-----AATT------------TACTT----TTTTCAAATGGGTCTTGAATA 4820 |||| |||| || || |||||| |||| || Sbjct 41325 TATTTAAATTGCAAAATTATACAGTAGAAATATTTATACTTTTCATCATTTTCTTTTATG 41266 Query 4821 TAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAAT 4880 |||||||| || || | || |||||||| || || |||||||| || || ||||| Sbjct 41265 TAAGTGTCAATCAGCAAACTGTACATTTCCGAGTGAATATTTTCAATCATTATTTGAAAA 41206 Query 4881 CCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCT--------- 4931 | |||||| || | ||||||| ||||| ||| ||||| ||| |||||| Sbjct 41205 CTGTAAAAACAACGAGCTTCTAATACTTTAACATCGTTTATAAACCTTTCTGCCTAATTT 41146 Query 4932 -----------------------------ACTAAGTTTTCGTTTACTATACCGTCACTGG 4962 || |||||||| || || || || || || | Sbjct 41145 TAATTATTTTTTCATTTTTAAAACTATTTACCAAGTTTTCATTCACGATGCCATCGCTTG 41086 Query 4963 CTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGC--TTAAGTTTT-- 5018 |||||||||| |||||||| || ||||| | | |||||| | | |||| || | Sbjct 41085 CTGCAAAAAAAGCCAAAACGTGTTTAATAAAATGCCTTTCGTC-GTCATTTAATTTATCG 41027 Query 5019 TTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCC 5078 ||||| | | | || | ||||||||||||| ||| |||||||| || ||| | Sbjct 41026 TTCCAATCAGAAACGTCATGGCTTAAATCAACTTCATCAGTTGTCCAAAAAGAGGCTACT 40967 Query 5079 GCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGAC 5128 || ||||||||||| ||||| |||| || | ||| |||| ||||| Sbjct 40966 GCCTTTTTGTACATTTTCCAAAGATCATCGTATTTAATGGGAAACATGAC 40917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427031279572160