Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2489 237 2e-57 seq2628 145 1e-29 >seq2489 Length=37580 Score = 237 bits (262), Expect = 2e-57 Identities = 329/460 (72%), Gaps = 8/460 (2%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 ||||||| || ||||||||||||||||||||| | | |||||||| || || | || | Sbjct 23381 TCAAATTTTTCACCCCAAACATCATCCAATCCACGAAACTCATTTGGACAAATAAGTGTC 23322 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 || | |||||| | || ||| ||||||| | |||||||||||| | ||| ||| Sbjct 23321 CAATTTTCATCTTTTTCTACACGTCTCATAAACAAATCAGGTATCCACAATGCATAGAAT 23262 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 | ||||| ||| | ||| | | || |||| | | ||||| || | | Sbjct 23261 AAATCTCTCGTTTTGGTTTCATTAGAACCAATATTAGTGCGCAATGTAAGAAAATCAAAA 23202 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCC 78164 ||||||| |||||| ||||||| ||| || || || |||| |||| ||| ||||| || Sbjct 23201 ATATCAGCATGCCAAGGTTCTAAATAAATGGCGATTGCTCCGGGTCTTTTGTTACCACCT 23142 Query 78165 TGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGAT 78224 || |||| ||||| || ||| | | |||||| ||||| |||| ||| || || ||| Sbjct 23141 TGGTCTACATATCGAGCTGTGGCGTCAAAAACTCGTAACATAGGAACAATTCCATTTGAT 23082 Query 78225 GTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATAT---- 78280 |||||||| ||||| |||||||| || | | |||||| |||| |||| Sbjct 23081 GTTCCATTCGTTCCTTTTATATAACTACCCTTGGATCGAATA----CAATGTATATTAAC 23026 Query 78281 CCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACC 78340 || ||||| || || |||| || ||||||||||| || | ||||||||||| || || Sbjct 23025 TCCGATTCCACCAGCACTCTTGGAAATTAGAGCGCATTGTCTTAATGTATCGTAAATTCC 22966 Query 78341 CTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || ||||||||| |||| |||||||||| || ||| Sbjct 22965 TTCAATGCTGTCATCCTTCATAGTAAGAAGAAAGCAACTA 22926 Score = 192 bits (212), Expect = 8e-44 Identities = 351/507 (69%), Gaps = 13/507 (3%) Strand=Plus/Minus Query 76761 TTTATTTTATTCTTATCCAATGTAAACTGAATTG-GAGAAGATG-CGGGTTTTGTACGTA 76818 ||| ||||||| || | | |||||||| ||| | | | || | ||||| || | || Sbjct 25860 TTTTTTTTATTATTCTGAACAGTAAACTG--TTGAGCGTTGGTGGCAGGTTTAGTTCTTA 25803 Query 76819 GATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTT 76878 ||| ||||| ||||| || | |||| |||| ||| ||||| | ||||||| || Sbjct 25802 AATAATACATGCCAGTCTTCAAACCCTTTTTCCAAGTGTAAAAATGTAAACTTGTCAATT 25743 Query 76879 TGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTC 76938 | | |||| | ||| |||||||||||||| || ||||||||||| || || Sbjct 25742 TAGCATAATTTGGACTTTGAATATGAATATTCATAGATTGACTTTGATCTATATAAATAG 25683 Query 76939 CTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAA 76998 |||||||||| ||||| | |||||| || || || |||||||| | ||||||| | | Sbjct 25682 CTCTATCAGCTGCCATATCTATAATTAATTTCTGTGGTATTTCCCATACAGTTTTGTACA 25623 Query 76999 CTTGTTTGATATCATCTGGAAGGTTTG-----TATTTTGAATGGAACCACCATCTGATAT 77053 | || | || | || ||| ||| |||||| |||||| | ||||||| Sbjct 25622 AATCCTTCAATTCTTGGCTAA--TTTCATCAATATGTTGAATTGAACCATAACCTGATAT 25565 Query 77054 AATTGTATTCTTTATATCATCATTCCACA-ATTTCCTCTCTGTTAAAACTCTAAGGAGAT 77112 | | |||| | || | |||||| | | | | | |||||| |||| | | || Sbjct 25564 CAGTTTATTTCTCATGGTTTTATTCCAAAGACCTAAT-TGAGTTAAATCTCTCAATAAAT 25506 Query 77113 GAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTAT 77172 | | ||| |||| ||||||||| ||||| || || | |||| ||||| ||||| ||| Sbjct 25505 GCGAATTGACTACTTGAAATTCACCAGATAAAACCCGACGAACGTAAAGGTTACTTGTAA 25446 Query 77173 ATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTG 77232 ||| ||| | ||||| || ||||| ||||||||||| || || || || |||||||||| Sbjct 25445 ATGCTTCAATTGATTCGTTATTTCCTAAAATTTGAGCCGTTGACGCTGTAGGCATAGGTG 25386 Query 77233 CCACCAATAAACTATTTCTGAGACCAT 77259 | || ||| |||||| | ||||| Sbjct 25385 ATAACAGCAAAGAATTTCTAACACCAT 25359 Score = 149 bits (164), Expect = 9e-31 Identities = 231/323 (72%), Gaps = 9/323 (3%) Strand=Plus/Minus Query 77562 TCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTA 77621 ||||||| |||||||||||| || ||||||||||| ||||| ||| | |||| |||| | Sbjct 24656 TCTGGAACAGGATAATAATTGATATCTATAATTTTGTTGAGGTTTTTGACAATGACTTGA 24597 Query 77622 ACCACGTCCTTT--AGTTTAAGAAAATCAAA-TCTTCCATCTATAACAA-ACATGTTC-- 77675 | | |||| | ||| ||||||||| |||| |||| || || | || || Sbjct 24596 GTAA--TTCTTTCCAATTTTTTAAAATCAAACTCTTT-ATCTTTAGAAACAAATTTTGGT 24540 Query 77676 AAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATC 77735 ||||| || ||||| | ||| || || || || | ||| || | ||||| ||| || Sbjct 24539 AAAGCAATGGATGCCAAATTGCAGACCGCAGTTTCGTCAGCATTCGAATATTCTATAATT 24480 Query 77736 TCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTG 77795 || |||||||||||||| || || ||||| || | ||||| || || || ||||| Sbjct 24479 TCTGTACATAGATTACTGCACTTTATAGTTCCAACGTTTTGCTGATTTGATTTACTATTG 24420 Query 77796 CATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGAT 77855 |||| |||||||| | ||| | || || |||||||| ||||| | ||||||| Sbjct 24419 CATGCATCCTTATACAACATATATGGTACACCTGTTTCAATTTGTGAATTTATAATAGCG 24360 Query 77856 TTCCAGACGACTCTAGCTTTTAT 77878 | ||| | ||||| |||||||| Sbjct 24359 TGCCATAAAACTCTTGCTTTTAT 24337 >seq2628 Length=67642 Score = 145 bits (160), Expect = 1e-29 Identities = 616/985 (63%), Gaps = 126/985 (13%) Strand=Plus/Minus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATA-TAT 47907 ||| || ||||| || || ||| || ||||| || || || ||| ||||| || ||| Sbjct 41901 TTTCTGGTATTCTCCTACTCGTCGTTCAAAAAAGTTTGTCTTTCCT-CCAATACTAATAT 41843 Query 47908 TTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTA-ATTCTGAA 47966 | ||||| |||||||| |||||| ||| ||| |||| ||||| ||| | ||| || | Sbjct 41842 TATCCATGAAATCAAAGGGATTATCTGAATTGTAAACTTTTTGTTGTCCAAGATTTTGCA 41783 Query 47967 ATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATA 48026 | || ||| |||| ||||| |||||| ||| | ||| ||||| || || Sbjct 41782 AAAGGTA-ATCACCAACAAATTCAATATATTGACACATTAAATCATGGTTCATGCCGATT 41724 Query 48027 AGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATT 48086 ||| |||| || | ||| || || | ||| |||||||| || | ||||| || ||| Sbjct 41723 AGTCTAACGGGCAAAGCGTCAGTTAAAAATTCTTGTTCAATTGCAACAGCTTCAGTAATT 41664 Query 48087 ATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCA 48146 || |||||| ||| | | ||| | | ||||| | | |||| ||||| ||| Sbjct 41663 ATACGTGTTACAAGTTCTGCCATAGGTTTAACCTTTAAATGATCATACATCAAACAAGCA 41604 Query 48147 AAATCACAATG------------------------AAGACCT----------TCATCTCT 48172 || |||||||| |||| | ||||||| Sbjct 41603 AAGTCACAATGCAACCCCTGAAAGATATATAAACTAAGAAATAATGAATACCTCATCTCG 41544 Query 48173 ACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAA 48232 ||| || | |||||| ||| ||||| || |||||| | |||||||| | |||||| Sbjct 41543 ACTGATGAGTTCGTTGCTAAAAGTGAGTCCTTTCATTAGACATCGTTTTTTCAACCAAAA 41484 Query 48233 TATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCT 48292 || | ||||| || || |||||||| || |||||||| || |||||||| || ||| Sbjct 41483 AATGGAAGCGAATGAACCTGAAAAGAAAATTCCTTCTACAGCAGCAAATGCTACAACTCT 41424 Query 48293 CTCTCCGTAACTGG-CT-TCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTT 48350 | ||| ||| || || | ||||| |||||||| ||||| || | Sbjct 41423 ATGAGAGTA--TGGACTGTCATCCCCAATCCATTTCAATGCCCAATTTGCCTTTTTTCGT 41366 Query 48351 ACACAAGGCATTGTTTCTATAGCATTAAAGA----------------------------- 48381 | || ||||| || || || ||||| || | Sbjct 41365 ATGCAGGGCATCGTATCGATTGCATTGAACAAACGATTCCTATTTAAATTGCAAAATTAT 41306 Query 48382 ------GAAAGtttt-----tttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACT 48430 |||| ||| |||||| | ||||| | |||||| || || | | ||| Sbjct 41305 ACAGTAGAAATATTTATACTTTTCATCATTTTCTTTTATGTAAGTGTCAATCAGCAAACT 41246 Query 48431 ATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTC 48490 |||||||| ||||||||||||||||| || ||||| | ||||||||| | ||||| Sbjct 41245 GTACATTTCCGAGTGAATATTTTCAATCATTATTTGAAAACTGTAAAAACAACGAGCTTC 41186 Query 48491 TGTGATCTGTACCTCCGTACA-AAATCGTTCAGCCAAATTCT-----------CATTT-- 48536 | | || || | ||| | ||| | ||| ||| |||| | ||||| Sbjct 41185 TAATA-CTTTAACATCGTTTATAAACCTTTCTGCCTAATTTTAATTATTTTTTCATTTTT 41127 Query 48537 ---ACTATT----------------------CCATCACTAGCAGCAAAAAATGCTAATAC 48571 |||||| ||||| || || |||||||| || || || Sbjct 41126 AAAACTATTTACCAAGTTTTCATTCACGATGCCATCGCTTGCTGCAAAAAAAGCCAAAAC 41067 Query 48572 ATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTA---TTCCAGTCATTGATATCTTT 48628 ||||||||||||| |||||| | | | | |||| ||||| ||| | || | Sbjct 41066 GTGTTTAATAAAATGCCTTTCGTCGTCATTTAATTTATCGTTCCAATCAGAAACGTCATG 41007 Query 48629 TGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCA 48688 || ||| ||||| |||| ||||||||| || || |||| ||||| ||||| ||||| Sbjct 41006 GCTTAAATCAACTTCATCAGTTGTCCAAAAAGAGGCTACTGCCTTTTTGTACATTTTCCA 40947 Query 48689 TATATCACTGTATTGGATTGGGAAA 48713 | |||| ||||| | ||||||| Sbjct 40946 AAGATCATCGTATT-TAATGGGAAA 40923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694638234572800