Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2489 208 1e-48 seq2628 156 6e-33 >seq2489 Length=37580 Score = 208 bits (230), Expect = 1e-48 Identities = 330/468 (71%), Gaps = 4/468 (1%) Strand=Plus/Minus Query 76510 ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA 76569 |||||| | ||||||| || ||||||||||||||||| ||| || | ||||| ||||| Sbjct 23391 ATATAATCTATCAAATTTTTCACCCCAAACATCATCCAATCCACGAAACTCATTTGGACA 23332 Query 76570 CATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAG 76629 || | || ||| | |||||| | || ||| ||||||| | |||||||||||| | Sbjct 23331 AATAAGTGTCCAATTTTCATCTTTTTCTACACGTCTCATAAACAAATCAGGTATCCACAA 23272 Query 76630 AGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCT-A 76688 ||| |||| ||||| ||| | ||| | | || |||| | | || | | Sbjct 23271 TGCATAGAATAAATCTCTCGTTTTGGTTTCATTAGAACCAATATTAGTGCGCA-ATGTAA 23213 Query 76689 GGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTT 76748 | || || | |||||||| |||||| ||||||| ||| || || || | || |||| || Sbjct 23212 GAAAATCAAAAATATCAGCATGCCAAGGTTCTAAATAAATGGCGATTGCTCCGGGTCTTT 23153 Query 76749 TATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAA 76808 | ||||| || || |||| ||||| || ||| | | |||||| ||||| |||| || Sbjct 23152 TGTTACCACCTTGGTCTACATATCGAGCTGTGGCGTCAAAAACTCGTAACATAGGAACAA 23093 Query 76809 TGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCA-CGAATATTACTA 76867 | || || ||||| ||||| ||||| |||||||| || | || | |||||| | Sbjct 23092 TTCCATTTGATGTTCCATTCGTTCCTTTTATATAACTACC-CTTGGATCGAATACAATGT 23034 Query 76868 ATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCA 76927 ||| | || ||||| || || | || || |||||||| || || | ||||| || Sbjct 23033 ATATTAACTCCGATTCCACCAGCACTCTTGGAAATTAGAGCGCATTGTCTTAATGTATCG 22974 Query 76928 TAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || || || || |||||| |||| |||||||||| || ||| Sbjct 22973 TAAATTCCTTCAATGCTGTCATCCTTCATAGTAAGAAGAAAGCAACTA 22926 Score = 172 bits (190), Expect = 8e-38 Identities = 316/462 (68%), Gaps = 7/462 (2%) Strand=Plus/Minus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 || ||||| || | || ||| ||||| ||||| || | |||| |||| ||| ||| Sbjct 25818 GCAGGTTTAGTTCTTAAATAATACATGCCAGTCTTCAAACCCTTTTTCCAAGTGTAAAAA 25759 Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517 || | ||||| | ||| | |||| | ||| |||||||||||||| || |||||| Sbjct 25758 TGTAAACTTGTCAATTTAGCATAATTTGGACTTTGAATATGAATATTCATAGATTGACTT 25699 Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 ||||| || || |||||||||| ||||| | |||||| || || || |||||| Sbjct 25698 TGATCTATATAAATAGCTCTATCAGCTGCCATATCTATAATTAATTTCTGTGGTATTTCC 25639 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATTTG-----TATTTTGAATGG 75632 || | ||||||| | | | || | || | || |||| ||| |||||| | Sbjct 25638 CATACAGTTTTGTACAAATCCTTCAATTCTT--GGCTAATTTCATCAATATGTTGAATTG 25581 Query 75633 ATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTA 75692 | || | | ||||| | | |||| | || | |||||| | | | |||| Sbjct 25580 AACCATAACCTGATATCAGTTTATTTCTCATGGTTTTATTCCAAAGACCTAATTGAGTTA 25521 Query 75693 AAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGT 75752 || |||| | | ||| | ||| || | ||||||||| ||||| || || | ||| || Sbjct 25520 AATCTCTCAATAAATGCGAATTGACTACTTGAAATTCACCAGATAAAACCCGACGAACGT 25461 Query 75753 AAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAG 75812 ||| ||||| ||| ||| ||| | ||||| || ||||| ||||||||||| ||||| | Sbjct 25460 AAAGGTTACTTGTAAATGCTTCAATTGATTCGTTATTTCCTAAAATTTGAGCCGTTGACG 25401 Query 75813 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCAT 75854 | || |||||||||| | || ||| |||||| | ||||| Sbjct 25400 CTGTAGGCATAGGTGATAACAGCAAAGAATTTCTAACACCAT 25359 Score = 154 bits (170), Expect = 2e-32 Identities = 230/323 (71%), Gaps = 9/323 (3%) Strand=Plus/Minus Query 76157 TCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTA 76216 ||||||| ||| |||||||| |||||||||||||| ||||| ||| |||||| |||| | Sbjct 24656 TCTGGAACAGGATAATAATTGATATCTATAATTTTGTTGAGGTTTTTGACAATGACTTGA 24597 Query 76217 ACCACGTCCTTT--AGTTTGAGAAAATCAAATTTTCCATCTATCACAAACATATTAAG-- 76272 | | |||| | ||| ||||||||| | | |||| | | ||||| ||| | Sbjct 24596 GTAA--TTCTTTCCAATTTTTTAAAATCAAACTCTTTATCTTT-AGAAACAAATTTTGGT 24540 Query 76273 --AGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATC 76330 ||| || ||||| | ||| || || || || | |||||| | ||||| ||| || Sbjct 24539 AAAGCAATGGATGCCAAATTGCAGACCGCAGTTTCGTCAGCATTCGAATATTCTATAATT 24480 Query 76331 TCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTA 76390 || || ||||||||||| ||||| |||||||||| ||||| || || || | || Sbjct 24479 TCTGTACATAGATTACTGCACTTTATAGTTCCAACGTTTTGCTGATTTGATTTACTATTG 24420 Query 76391 CATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGAT 76450 |||| |||||||| | | | | || || |||||||| ||||| | ||||||| Sbjct 24419 CATGCATCCTTATACAACATATATGGTACACCTGTTTCAATTTGTGAATTTATAATAGCG 24360 Query 76451 TTCCAGACGACTCTAGCTTTTAT 76473 | ||| | ||||| |||||||| Sbjct 24359 TGCCATAAAACTCTTGCTTTTAT 24337 >seq2628 Length=67642 Score = 156 bits (172), Expect = 6e-33 Identities = 627/997 (63%), Gaps = 139/997 (14%) Strand=Plus/Minus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATA-TAT 46396 ||| |||||||| ||||| ||| || ||||| || || || ||| ||||| || ||| Sbjct 41901 TTTCTGGTATTCTCCTACTCGTCGTTCAAAAAAGTTTGTCTTTCCT-CCAATACTAATAT 41843 Query 46397 TTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTA-ATTCTGAA 46455 | ||||| |||||||| |||||| ||| |||| ||||| ||| | ||| || | Sbjct 41842 TATCCATGAAATCAAAGGGATTATCTGAATTGTAAACTTTTTGTTGTCCAAGATTTTGCA 41783 Query 46456 ATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATT---TCACAATTCATTCCT 46512 | || ||| |||| ||||| ||||| || || |||| ||| ||||| || Sbjct 41782 AAAGGTA-ATCACCAACAAATTCAATATA--TTGACA-CATTAAATCATGGTTCATGCCG 41727 Query 46513 ATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGAT 46572 || ||| | || || | ||| || || | ||| ||||||||||| | ||||| || | Sbjct 41726 ATTAGTCTAACGGGCAAAGCGTCAGTTAAAAATTCTTGTTCAATTGCAACAGCTTCAGTA 41667 Query 46573 ATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACAT 46632 ||||| |||||| ||| | | ||| | | | ||||| | | |||| ||||| Sbjct 41666 ATTATACGTGTTACAAGTTCTGCCATAGGTTTAACCTTTAAATGATCATACATCAAACAA 41607 Query 46633 GCAAAATCACAATG-AAGGCCT---------------------------------TCATC 46658 ||||| |||||||| || ||| ||||| Sbjct 41606 GCAAAGTCACAATGCAACCCCTGAAAGATATATAAACTAAGAAATAATGAATACCTCATC 41547 Query 46659 TCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCA 46718 || ||| || | |||||| ||| ||||| || |||||| | || ||||| | ||| Sbjct 41546 TCGACTGATGAGTTCGTTGCTAAAAGTGAGTCCTTTCATTAGACATCGTTTTTTCAACCA 41487 Query 46719 AAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAG 46778 ||| || | ||||| || || |||||||| || ||||||||||| || ||||| |||| Sbjct 41486 AAAAATGGAAGCGAATGAACCTGAAAAGAAAATTCCTTCTACAGCAGCAAATGCTACAAC 41427 Query 46779 TCTCTCTCCGTA---ACTGGCATCATTATGAATCCACCTTTGA--GCCCAATCAGCCTTT 46833 ||| | ||| |||| |||| |||||| ||| | ||||||| |||||| Sbjct 41426 TCTATGAGAGTATGGACTG---TCATCCCCAATCCA--TTTCAATGCCCAATTTGCCTTT 41372 Query 46834 TTCTTTACACAAGGCATTGTTTCTATAGCATTAAA------------------------- 46868 || || || ||||| || || || ||||| || Sbjct 41371 TTTCGTATGCAGGGCATCGTATCGATTGCATTGAACAAACGATTCCTATTTAAATTGCAA 41312 Query 46869 ----------GAGAAAGttt-----ttttCATCACTATCTTTAACATATGTATCTATTAA 46913 ||||| || ||||||||| | ||||| | || || || || | Sbjct 41311 AATTATACAGTAGAAATATTTATACTTTTCATCATTTTCTTTTATGTAAGTGTCAATCAG 41252 Query 46914 AAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCT 46973 | ||| |||||||| || ||||| |||||||| || ||||| | ||||||||| | Sbjct 41251 CAAACTGTACATTTCCGAGTGAATATTTTCAATCATTATTTGAAAACTGTAAAAACAACG 41192 Query 46974 TGCTTCAGTAAT-CTGT-ACCTC-TGTACAAA---------------------------- 47002 ||||| |||| || | || || | || ||| Sbjct 41191 AGCTTC--TAATACTTTAACATCGTTTATAAACCTTTCTGCCTAATTTTAATTATTTTTT 41134 Query 47003 -ATCGTTCAGA--------CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATG 47053 || || | | ||| || |||||||| || ||||| || || |||||||| | Sbjct 41133 CATTTTTAAAACTATTTACCAAGTTTTCATTCACGATGCCATCGCTTGCTGCAAAAAAAG 41074 Query 47054 CCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTA---TTCCAGTCATTGA 47110 |||| || ||||||||||||| |||| ||| | | | |||| ||||| ||| | Sbjct 41073 CCAAAACGTGTTTAATAAAATGCCTTTCGTCGTCATTTAATTTATCGTTCCAATCAGAAA 41014 Query 47111 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACA 47170 || | || ||| ||||| |||| |||||| || || || |||| ||||| |||| Sbjct 41013 CGTCATGGCTTAAATCAACTTCATCAGTTGTCCAAAAAGAGGCTACTGCCTTTTTGTACA 40954 Query 47171 TATTCCATATATCACGATATTGGATCGGAAAAATAAC 47207 | ||||| | |||| |||| || ||||| || || Sbjct 40953 TTTTCCAAAGATCATCGTATTTAATGGGAAACATGAC 40917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712903030886400