Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2377 111 3e-19 seq1640 93.3 9e-14 >seq2377 Length=22370 Score = 111 bits (122), Expect = 3e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 282888 AGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATC 282946 ||||| | ||| || || |||||| || || || || ||| ||| | | | |||||| Sbjct 321 AGTACTAAATGCAAAGTAGATTCTTTCTGAATATTATAATCACTCAAACTT-CTGCCATC 263 Query 282947 CTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTC 283006 || | |||||| || ||||| || |||||||||||||| ||||| || ||||| || Sbjct 262 TTCCAATTGTTTACCAGCAAAAATTAAACGTTGTTGGTCTGGAGGAATCCCTTCCTTATC 203 Query 283007 TTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGT 283066 ||| || ||||||||||| | || || || || || ||| ||||| || || || || Sbjct 202 TTGAATTTTTGCTTTTACATTTTCAATTGTATCGCTAGGTTCAACTTCAAGGGTAATGGT 143 Query 283067 CTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || | || ||||| || || ||||| Sbjct 142 TTTTCCGGTAAGTGTTTTAACAAAAATTTGCAT 110 >seq1640 Length=44113 Score = 93.3 bits (102), Expect = 9e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 282965 AAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024 ||| || ||||||||||| || ||||| ||||| || ||||| || || || || || Sbjct 44113 AAAAATTAAACGTTGTTGATCTGGAGGAATTCCCTCTTTATCTTGAATTTTCGCCTTAAC 44054 Query 283025 GGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTT 283084 | || ||||| || || || ||||| ||||| || ||||| || || ||||| || Sbjct 44053 ATTTTCAATAGTATCACTAGGCTCAACTTCAAGAGTAATAGTCTTTCCAGTTAAAGTTTT 43994 Query 283085 AACGAATATCTGCATTTTC 283103 ||| ||||| ||||||||| Sbjct 43993 AACAAATATTTGCATTTTC 43975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046691992062080