Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2628 208 8e-49 >seq2628 Length=67642 Score = 208 bits (230), Expect = 8e-49 Identities = 647/1016 (64%), Gaps = 128/1016 (13%) Strand=Plus/Minus Query 23199 ACTATTCATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTT 23258 ||| | ||| ||||| ||| || ||||| || || |||| ||| ||||| |||||||| Sbjct 41919 ACTGTCCATGACACCAGATTTCTGGTATTCTCCTACTCGTCGTTCAAAAAAGTTTGTCTT 41860 Query 23259 ACCCTCTAATGATA-TATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTT 23317 || || ||| || |||| ||||| |||||||| |||||| | ||| || || || Sbjct 41859 TCC-TCCAATACTAATATTATCCATGAAATCAAAGGGATTATCTGAATTGTAAACTTTTT 41801 Query 23318 ----TACATGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATC 23373 | || ||| | | ||||| ||| | ||||||||||||||||||||||| Sbjct 41800 GTTGTCCAAGATTTTGC----AAAAGGTAATCACCAACAAATTCAATATATTGACACATT 41745 Query 23374 AAATCATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCA 23433 ||||||| ||| || || |||||| | || || | || ||| ||| ||| || |||| Sbjct 41744 AAATCATGGTTCATGCCGATTAGTCTAACGGGCAAAGCGTCAGTTAAAAATTCTTGTTCA 41685 Query 23434 ATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAA 23493 || | |||||| || ||||||| | | || |||| | ||||| | |||||| Sbjct 41684 ATTGCAACAGCTTCAGTAATTATACGTGTTACAAGTTCTGCCATAGGTTTAACCTTTAAA 41625 Query 23494 TACTTAAACAATAAACATGCAAAATCACAATG-----------------------TAGG- 23529 | | | ||| ||||| ||||| |||||||| || | Sbjct 41624 TGATCATACATCAAACAAGCAAAGTCACAATGCAACCCCTGAAAGATATATAAACTAAGA 41565 Query 23530 ----------CCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAA 23579 | ||||| | ||| || | ||| || ||| || | |||| ||||| Sbjct 41564 AATAATGAATACCTCATCTCGACTGATGAGTTCGTTGCTAAAAGTGAGTCCTTTCATTAG 41505 Query 23580 TCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAAC 23639 | ||||||||| | |||||| || | ||| ||||| || ||||||||||| || || || Sbjct 41504 ACATCGTTTTTTCAACCAAAAAATGGAAGCGAATGAACCTGAAAAGAAAATTCCTTCTAC 41445 Query 23640 AGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttt 23699 ||| ||||| || |||| | || | | || | | | ||| ||||||||| Sbjct 41444 AGCAGCAAATGCTACAA---CTCTATGAGAGTATGGACTGTCATCCCCAATCCATTTCAA 41388 Query 23700 tGTCCAATTAGCCT-----------------------TCAATT---TTACACACTCAAT- 23732 || |||||| |||| || ||| || ||| | || Sbjct 41387 TGCCCAATTTGCCTTTTTTCGTATGCAGGGCATCGTATCGATTGCATTGAACAAACGATT 41328 Query 23733 --TGTTTCAATTGC----TTTTA-AG-AGAAAAGTT-----TTTTCTTCATTATCTGTTA 23779 | ||| |||||| || || || ||||| || ||||| ||||| ||| ||| Sbjct 41327 CCTATTTAAATTGCAAAATTATACAGTAGAAATATTTATACTTTTCATCATTTTCTTTTA 41268 Query 23780 TATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAA 23839 | || || ||||| || ||||| |||||||| || |||||||||||||| || |||| Sbjct 41267 TGTAAGTGTCAATCAGCAAACTGTACATTTCCGAGTGAATATTTTCAATCATTATTTGAA 41208 Query 23840 ACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGC----- 23894 | | |||||||| | |||||| | | || |||||| || | ||| |||| || Sbjct 41207 AACTGTAAAAACAACGAGCTTCTAATACTTTAACATCGTTTATAAACCTTTCTGCCTAAT 41148 Query 23895 --------------------TAAA-------------TTTTCGTTAACAATACCATCACT 23921 |||| ||||| || || || ||||| || Sbjct 41147 TTTAATTATTTTTTCATTTTTAAAACTATTTACCAAGTTTTCATTCACGATGCCATCGCT 41088 Query 23922 AGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTT---TCATCAGTTGATAATTT 23978 || ||||| ||||| | ||| | ||| |||||||| ||| || ||| || || | Sbjct 41087 TGCTGCAAAAAAAGCCAAAACGTGTTTAATAAAATGCCTTTCGTCGTCATTTAATTTATC 41028 Query 23979 TTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAA 24038 ||||||||| || || | |||||||||||||||| |||||||||| || | Sbjct 41027 GTTCCAATCAGAAACGTCATGGCTTAAATCAACTTCATCAGTTGTCCAAAAAGAGGCTAC 40968 Query 24039 GGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATC 24094 || || |||||| ||||| ||||| | || || ||||| || ||| ||| Sbjct 40967 TGCCTTTTTGTACATTTTCCAAAGATCATCGTATTTAATGGGAAACATGACGTATC 40912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521465054528000