Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1531 116 4e-21 seq1530 116 4e-21 >seq1531 Length=18023 Score = 116 bits (128), Expect = 4e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| || ||||| | ||| || |||||||| || || || || || || || || ||| Sbjct 8612 ATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCAATTTGA 8671 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 |||||||| ||| ||| |||||| | ||||||||| ||| | ||| ||||| Sbjct 8672 AATCCATAAAAGAATCTAGCCTCAGGCCATTGTACTTCATTTGCAAAACATTCAACCAGG 8731 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTG 16638 || ||||| || ||||| ||||| |||||||| || |||||||| || Sbjct 8732 TTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATG 8778 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/217 (70%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 16036 ATCTGCTACAAATTCTATATATTGACACAT-TAAGTCGCAATTAATTCCTATAAGTCGTA 16094 ||| ||||||||||||||||| | |||||| | || | ||||| ||||| ||||| | Sbjct 8065 ATCAGCTACAAATTCTATATACTTACACATATCAG-CACAATTCATTCCAATAAGATTCA 8123 Query 16095 CCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGG 16154 | || | ||||| | ||||||| || ||| || |||| ||||| | || || | Sbjct 8124 CAGGTAAAGCTTCACTGAAAAATTCTTTTTCAATATCAACTGCTTCAGTGATAATTTGTT 8183 Query 16155 TGGCTCGTGTTTCA---GACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGT 16211 || | | ||| || ||| | | |||| || |||||||||| || || || | Sbjct 8184 TGAC---TAAATCAAATGATGGTTTGTATTTTATGTAGTTAAACATTAAGCAAGCAAAAT 8240 Query 16212 CGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTT 16248 | || |||||||| ||||| ||||||||||| || Sbjct 8241 CAGTGTGAAGTCCTTCATCTCTACTGATAAGTTCATT 8277 >seq1530 Length=18023 Score = 116 bits (128), Expect = 4e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| || ||||| | ||| || |||||||| || || || || || || || || ||| Sbjct 8612 ATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCAATTTGA 8671 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 |||||||| ||| ||| |||||| | ||||||||| ||| | ||| ||||| Sbjct 8672 AATCCATAAAAGAATCTAGCCTCAGGCCATTGTACTTCATTTGCAAAACATTCAACCAGG 8731 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTG 16638 || ||||| || ||||| ||||| |||||||| || |||||||| || Sbjct 8732 TTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATG 8778 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/217 (70%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 16036 ATCTGCTACAAATTCTATATATTGACACAT-TAAGTCGCAATTAATTCCTATAAGTCGTA 16094 ||| ||||||||||||||||| | |||||| | || | ||||| ||||| ||||| | Sbjct 8065 ATCAGCTACAAATTCTATATACTTACACATATCAG-CACAATTCATTCCAATAAGATTCA 8123 Query 16095 CCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGG 16154 | || | ||||| | ||||||| || ||| || |||| ||||| | || || | Sbjct 8124 CAGGTAAAGCTTCACTGAAAAATTCTTTTTCAATATCAACTGCTTCAGTGATAATTTGTT 8183 Query 16155 TGGCTCGTGTTTCA---GACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGT 16211 || | | ||| || ||| | | |||| || |||||||||| || || || | Sbjct 8184 TGAC---TAAATCAAATGATGGTTTGTATTTTATGTAGTTAAACATTAAGCAAGCAAAAT 8240 Query 16212 CGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTT 16248 | || |||||||| ||||| ||||||||||| || Sbjct 8241 CAGTGTGAAGTCCTTCATCTCTACTGATAAGTTCATT 8277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511403935182840