Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq62 367 2e-96 seq1531 141 1e-28 seq1530 141 1e-28 >seq62 Length=56742 Score = 367 bits (406), Expect = 2e-96 Identities = 1054/1611 (65%), Gaps = 39/1611 (2%) Strand=Plus/Minus Query 53086 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 53145 ||| || || ||||||||||| | ||| | ||| | || || | || | || Sbjct 51841 ATTTTTTATATCATCATTCCAAATATTTAAATTAACCAAATCGCTTAGTAAATACTTGTT 51782 Query 53146 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 53205 |||||||||||||| || || || || | | || |||||||| || ||| | ||||| Sbjct 51781 TACTACTTGAAATTCACCTGATAAAACACGTCTAGAATAAATATTGCTCGTAAAAGGTTC 51722 Query 53206 CACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 53265 | || |||||||| || | |||||| | ||| ||||| || |||||||||| | ||| Sbjct 51721 AAAAGCTTCATTATTGCCGAGAATTTGTGAAGTAGATGCTGTAGGCATAGGTGAAATCAA 51662 Query 53266 TAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT--TTAGAGGT-TCCCAATTCCA 53322 | |||||||||| ||| || || | || ||||| || | || | ||||| ||| Sbjct 51661 AAGGCTATTTCTAACACCATACTTTTTTAT---ATCTTGCTTCAACGTGTTCCAATCCCA 51605 Query 53323 AAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACG 53381 |||||| | || || || ||||| || | ||| | || Sbjct 51604 AAGATCAGTAGGCGTTACATTCCACATATCATACTGAAGAATTCCCTGGCTGATAGGACT 51545 Query 53382 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 53441 | ||| | ||||| || ||||| || | | | ||||| |||||| || || | | Sbjct 51544 A-CCTTCGTATGTTTCATATGGACCATATTCTTTAGCTAATTCACATGATGCTTCAAGCG 51486 Query 53442 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 53501 |||| | |||||| ||||| || || | |||||| | || ||||| || |||| Sbjct 51485 CACCATGATAAATTGTTTCAAATATTTGTATATTTAATTTTTTAGCTTCTTCACTGTCAA 51426 Query 53502 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 53561 | || |||| | | ||| || || ||||||||||| ||||||| || || || | Sbjct 51425 AAGGCATCCTTAATAATACAAATGCATCAGCTAATCCTTGTACACCAACTCCAATTGGCC 51366 Query 53562 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 53621 |||| | | | || || | | ||||| ||||||||| | || |||| |||| || Sbjct 51365 TATGACGCATGTTTGAATTATAGGCTTCAATAATAGGATAGAAGTTTCTATCAATAACTT 51306 Query 53622 TATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATT--- 53678 | || | || | ||| ||||| || | ||||| ||||| |||| Sbjct 51305 TGTTTAAATTACGAACAGCAACTTTTGTAACGGTATGAAGTTTATCAAAATGAAATACAT 51246 Query 53679 -----------GTCC---ATCTATTACAAACA--TGTTCAATGCAATA--GATGCCAGAT 53720 || | || || | ||||| | || || | ||| ||||| | || Sbjct 51245 TAGTTGAATCGGTACTAGATTTAGGATAAACAAATTTTGAAAGAGATAACGATGCTAAAT 51186 Query 53721 TACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACT 53778 | || || || ||||| | || | |||| ||||| || ||||| ||||| || Sbjct 51185 TGCACACAGCAGTCTCATCCTTTGATGAG--TATTCAATTATTTCTGTGCACAGATTGCT 51128 Query 53779 ACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 53838 | |||| || || | ||||| |||||| || || | ||||| ||||| || ||||| Sbjct 51127 AGACTTAATAACACCAAGATTTTTTTGATTGCTTTTACTATTACAAGCATCTTTGTAAAG 51068 Query 53839 AATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGC 53898 || | || |||||||||||| || | ||||| || ||| | |||| Sbjct 51067 CATATAAGGTTGACCAGTTTCAATTTGAGCTTCTAGTATGAAAAACCATAGTTTTTGAGC 51008 Query 53899 CTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTC 53958 | ||| | |||||||| | |||| |||| || | | |||| | |||||||| Sbjct 51007 TTCAATTTGACGTTTGTATCGCCCTTCTTTTTCATACTTTATGTACAGTTCTTCAAACTT 50948 Query 53959 GTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCC 54018 || || || || | |||||| ||||||| || ||||| | ||||| ||| Sbjct 50947 TTCACCGTAACAATCCGAAAGTCCAGGGCATTCATGAGGGCACATAAGTGACCAGATTCC 50888 Query 54019 GTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCT 54076 | | | ||| |||||||||||||| | ||| || ||||| | || ||| || ||||| Sbjct 50887 ATTA-CTTTCTACTCGTTTCATAAACAAATCTGGTATCCATAAGGC-ATAGAAAAGATCC 50830 Query 54077 CTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCA 54136 || | | | ||||| | || ||||| ||| |||||| | || | | ||||| Sbjct 50829 CTAGCACGAATATCCTCACTACCAGTATTTTTTCGAAGATCTAAAAATTCTACTATATCG 50770 Query 54137 GAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCT 54196 | |||||| || || || ||||||| | || || || |||||||| || || || Sbjct 50769 GCATGCCATGGCTCTAAATATATGGCAAATGAGCCTGGACGCTTGTTTCCACCTTGGTCA 50710 Query 54197 ATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCA 54256 | ||| | || || || ||||||| || | ||||| ||| ||||| || |||| Sbjct 50709 ACGTAACGAGAACAATTGTTGTAAACTCGTAAAAGTGGAACAATTCCATTAGAATTACCA 50650 Query 54257 TTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCC 54316 || || || | ||||| | |||| || ||||||||| ||| ||| || | || Sbjct 50649 TTCGTTCCTGCAATATATGTACCACAAGCTCGAATATTATGAATATGTAGTCCCACTCCA 50590 Query 54317 CCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTA 54376 || || | ||| ||||| | || || ||| | |||||| | || || ||||| ||| Sbjct 50589 CCGGCAAATTTGGAGATCATAGCACAGTTTTTAAGTGTATCAAATATACCTTCTATGCTA 50530 Query 54377 TCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTA 54436 || || |||| | | |||||| ||||||||||| ||||| ||||| ||||| Sbjct 50529 TCGTCTTTCATTGCCAACAAAAAACAACTAGACATTTGAGGACGAGGTGTTCCAGCATTG 50470 Query 54437 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG-TAGATTGTACGTCTCGAT 54495 |||||||| |||| || || |||||||| ||| || | ||| || || || || || Sbjct 50469 AATAAGGTTGGAGTTGCATGAGTAAACCAACGTTCTGACATATAG-TTATATGTTTCTAT 50411 Query 54496 AGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 54555 || || || ||||| ||| || || || || || | ||| ||||| || ||||| Sbjct 50410 TGCAGATTCAATATCATCAAAATGTATACCAACAGCAACTCTCATCAACATATGTTGAGG 50351 Query 54556 TCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACC 54615 |||||| || || || | ||| |||| | || ||| |||| | ||||||||||| Sbjct 50350 TCTTTCCACAATTTTTCCATCTATCTTCATTAGATAAGATCTTTCAAGGGTTTTAAAACC 50291 Query 54616 AAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTT 54666 ||||||| || | |||||| | |||| ||| |||| || | ||| Sbjct 50290 AAAATAGGAATAATCATAGTCTCTATGATAAACTATAGCTGAATTTAATTT 50240 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 54783 TTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGAT 54842 ||||||||||||| ||||| ||||| | |||||||| |||| ||| |||||||| |||| Sbjct 49460 TTGTTTCTTTGTGGAGATTAGATACAACAATTCTAGCAGCTAAAATAGCATAATCTGGAT 49401 Query 54843 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTA 54902 || ||||||| | || || ||||| || | | | || | ||| | ||||||| Sbjct 49400 GTCGTGTAGTCATTGAAGCAGCAATTTCCGCAGCTAAGTTATCTAGTTCAATAGTTGTTA 49341 Query 54903 CTCCATTATATATTCCTTGGATAACCTT 54930 ||||| ||||||||| | ||||| || Sbjct 49340 CTCCAGCATATATTCCATTAATAACTTT 49313 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 52832 GGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGC 52891 || || | ||||| |||||||||||| ||||| ||||| ||||||| ||||| ||| Sbjct 52145 GGCTTTGAACGTAAATAGTACATTCCAGTTTTGAGACCTTTCTTCCATCCATAAAAGTGC 52086 Query 52892 ATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGA 52951 | |||||| || | | | || ||||| ||| ||||| | ||| ||||||||| Sbjct 52085 AAACTTGTCAGACGACCAAAGTTTGGCTCTGCCATAAATATATTGAGAGACTGACTTTGA 52026 Query 52952 TCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA-ATTTCCCA 53010 || || ||||| || | || || ||||| | | | | ||| |||| |||||||| Sbjct 52025 TCAATAAAGGCACCTCGATCAGCTGCCATGTCAACCA-AGGATTTCATGGACATTTCCCA 51967 Query 53011 AATAGTTTTATAAACTCGCTTAATATCTTCTGG 53043 |||||||||| || ||| | || |||||| Sbjct 51966 TGCTGTTTTATAAAGTCTCTTTAAATGTTCTGG 51934 >seq1531 Length=18023 Score = 141 bits (156), Expect = 1e-28 Identities = 146/186 (78%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 ||||||| |||||| ||||| || | ||||||||||| |||||||| |||||||| || Sbjct 8606 TCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCA 8665 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGTACTTC-TATACAAAATCGTT 24513 ||||||||||| || || |||||||||| || || |||||||| | | ||||| | || Sbjct 8666 ATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCAT-TGTACTTCATTTGCAAAA-CATT 8723 Query 24514 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 24573 | | | |||||||| || || || ||||| || ||||| || ||||||| ||| || Sbjct 8724 CAACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATA 8783 Query 24574 TAAAAT 24579 |||||| Sbjct 8784 TAAAAT 8789 >seq1530 Length=18023 Score = 141 bits (156), Expect = 1e-28 Identities = 146/186 (78%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 ||||||| |||||| ||||| || | ||||||||||| |||||||| |||||||| || Sbjct 8606 TCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCA 8665 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGTACTTC-TATACAAAATCGTT 24513 ||||||||||| || || |||||||||| || || |||||||| | | ||||| | || Sbjct 8666 ATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCAT-TGTACTTCATTTGCAAAA-CATT 8723 Query 24514 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 24573 | | | |||||||| || || || ||||| || ||||| || ||||||| ||| || Sbjct 8724 CAACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATA 8783 Query 24574 TAAAAT 24579 |||||| Sbjct 8784 TAAAAT 8789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593709450971760