Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_001824.1 Length=102653 Score E Sequences producing significant alignments: (Bits) Value seq1620 91.5 1e-13 seq723 91.5 1e-13 >seq1620 Length=46792 Score = 91.5 bits (100), Expect = 1e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 12780 AATGGTCATGCGACTAGGAAAGGCATGTGGGTTAATGATTAAATCAGGTACTATGCCATC 12839 ||||||||| ||||| |||| ||||| || || || || | ||| || ||||| ||||| Sbjct 24961 AATGGTCATACGACTTGGAATAGCATGAGGATTGATAATAATATCGGGAACTATTCCATC 25020 Query 12840 TTTAGTGAAAGGCATGTTTTCTTGGGCATAAATCATACCACAGGTACCTTTTTGTGCGGT 12899 ||| || ||||| | |||||| ||| | |||||||| ||||||||||| | Sbjct 25021 AGCAGTAAACGGCATATCTTCTTGACGATATGTTATACCACATGTACCTTTTTGACCATG 25080 Query 12900 AAAAGAAGCAAATTTATCTCCTATTTCAGGTATTTTTGGAGATCGTAATTTAATTTTA 12957 | ||||||||||| || |||| ||| ||| | || || | ||||| |||| Sbjct 25081 TCTACTTGCAAATTTATCACCAATTTGAGGAATTCTAACTGAACGAACTTTAACTTTA 25138 >seq723 Length=46792 Score = 91.5 bits (100), Expect = 1e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 12780 AATGGTCATGCGACTAGGAAAGGCATGTGGGTTAATGATTAAATCAGGTACTATGCCATC 12839 ||||||||| ||||| |||| ||||| || || || || | ||| || ||||| ||||| Sbjct 21832 AATGGTCATACGACTTGGAATAGCATGAGGATTGATAATAATATCGGGAACTATTCCATC 21773 Query 12840 TTTAGTGAAAGGCATGTTTTCTTGGGCATAAATCATACCACAGGTACCTTTTTGTGCGGT 12899 ||| || ||||| | |||||| ||| | |||||||| ||||||||||| | Sbjct 21772 AGCAGTAAACGGCATATCTTCTTGACGATATGTTATACCACATGTACCTTTTTGACCATG 21713 Query 12900 AAAAGAAGCAAATTTATCTCCTATTTCAGGTATTTTTGGAGATCGTAATTTAATTTTA 12957 | ||||||||||| || |||| ||| ||| | || || | ||||| |||| Sbjct 21712 TCTACTTGCAAATTTATCACCAATTTGAGGAATTCTAACTGAACGAACTTTAACTTTA 21655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328358248814398