Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1466 95.1 1e-14 seq1258 95.1 1e-14 seq1155 95.1 1e-14 seq630 91.5 1e-13 seq1253 89.7 4e-13 >seq1466 Length=125466 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || || |||||||| || || ||||| ||||| ||| || || | Sbjct 71451 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGACCCATCT 71510 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || |||| |||||| || ||||||||| | || ||||||| Sbjct 71511 GATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 71570 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||||| || || || || || ||| | |||||| | ||| | | ||||| ||| Sbjct 71571 CAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCAGATTATAAT 71630 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||||| || ||||| |||| || || | || ||||| Sbjct 71631 GTTCAAAAGGAATCAACACTTCATTTGGTACTAAGACTTCGTGGAGG 71677 >seq1258 Length=100613 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || || |||||||| || || ||||| ||||| ||| || || | Sbjct 40210 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGACCCATCT 40269 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || |||| |||||| || ||||||||| | || ||||||| Sbjct 40270 GATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 40329 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||||| || || || || || ||| | |||||| | ||| | | ||||| ||| Sbjct 40330 CAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCAGATTATAAT 40389 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||||| || ||||| |||| || || | || ||||| Sbjct 40390 GTTCAAAAGGAATCAACACTTCATTTGGTACTAAGACTTCGTGGAGG 40436 >seq1155 Length=100669 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || || |||||||| || || ||||| ||||| ||| || || | Sbjct 60460 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGACCCATCT 60401 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || |||| |||||| || ||||||||| | || ||||||| Sbjct 60400 GATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 60341 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||||| || || || || || ||| | |||||| | ||| | | ||||| ||| Sbjct 60340 CAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCAGATTATAAT 60281 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||||| || ||||| |||| || || | || ||||| Sbjct 60280 GTTCAAAAGGAATCAACACTTCATTTGGTACTAAGACTTCGTGGAGG 60234 >seq630 Length=36350 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || || || |||||| | || || ||||| ||||| ||| ||| || | Sbjct 225 AATGCAGATTTTTATTAAAACACTAACTGGAAAAACTATTACACTTGAAGTGGATCCTTC 166 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | || || || || || |||||| | || |||||| Sbjct 165 TGACACTATTGAAAATGTAAAATCTAAGATCCAAGACAAGGAAGGTATACCTCCAGATCA 106 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||||| | || ||||| || ||||||||||||||| | ||| | | || ||||| Sbjct 105 ACAAAGATTGATTTTTGCTGGAAAACAATTGGAAGATGGAAGAACCCTTTCGGACTACAA 46 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGG 25258 | ||||||||||||| || || || | || | |||||| |||| Sbjct 45 TGTTCAAAAGGAATCCACCCTCCATCTTGTTCTTCGATTAAGAGG 1 >seq1253 Length=11614 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || |||||| | || ||||||||||||| | || ||||| || |||||||||||| Sbjct 11545 GACAAGGAAGGTATACCTCCAGATCAACAAAGATTGATTTTTGCTGGAAAACAATTGGAA 11486 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | ||| | | || |||||| ||||||||||||| || || || | || | Sbjct 11485 GATGGAAGAACCCTTTCGGACTACAATGTTCAAAAGGAATCCACCCTCCATCTTGTTCTT 11426 Query 25248 CGATTACGAGGAGGGTA 25264 |||||| |||| || || Sbjct 11425 CGATTAAGAGGTGGCTA 11409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410788604218718