Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1466 158 2e-33 seq1258 158 2e-33 seq1155 158 2e-33 seq630 127 3e-24 seq1253 102 1e-16 seq724 89.7 8e-13 >seq1466 Length=125466 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || |||||||| ||| |||| || |||||||| ||| | || |||| || | Sbjct 71451 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGACCCATCT 71510 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| ||||||||||| ||||||||||| ||||| |||||| Sbjct 71511 GATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 71570 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || || || || ||||| ||| | || ||| || ||||| | |||||||||| Sbjct 71571 CAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCAGATTATAAT 71630 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||| |||||||| | |||||||| || | | || || ||||| Sbjct 71631 GTTCAAAAGGAATCAACACTTCATTTGGTACTAAGACTTCGTGGAGGTAT 71680 >seq1258 Length=100613 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || |||||||| ||| |||| || |||||||| ||| | || |||| || | Sbjct 40210 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGACCCATCT 40269 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| ||||||||||| ||||||||||| ||||| |||||| Sbjct 40270 GATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 40329 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || || || || ||||| ||| | || ||| || ||||| | |||||||||| Sbjct 40330 CAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCAGATTATAAT 40389 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||| |||||||| | |||||||| || | | || || ||||| Sbjct 40390 GTTCAAAAGGAATCAACACTTCATTTGGTACTAAGACTTCGTGGAGGTAT 40439 >seq1155 Length=100669 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || |||||||| ||| |||| || |||||||| ||| | || |||| || | Sbjct 60460 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGACCCATCT 60401 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| ||||||||||| ||||||||||| ||||| |||||| Sbjct 60400 GATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 60341 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || || || || ||||| ||| | || ||| || ||||| | |||||||||| Sbjct 60340 CAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCAGATTATAAT 60281 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||| |||||||| | |||||||| || | | || || ||||| Sbjct 60280 GTTCAAAAGGAATCAACACTTCATTTGGTACTAAGACTTCGTGGAGGTAT 60231 >seq630 Length=36350 Score = 127 bits (140), Expect = 3e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||||| || |||||||| || |||||||| || | || | || | Sbjct 225 AATGCAGATTTTTATTAAAACACTAACTGGAAAAACTATTACACTTGAAGTGGATCCTTC 166 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| ||||| || || ||||| || ||||||||||| || ||||| Sbjct 165 TGACACTATTGAAAATGTAAAATCTAAGATCCAAGACAAGGAAGGTATACCTCCAGATCA 106 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | |||||||| ||||||||||| || ||| | |||| | || || || Sbjct 105 ACAAAGATTGATTTTTGCTGGAAAACAATTGGAAGATGGAAGAACCCTTTCGGACTACAA 46 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGG 124762 | ||||||| ||||| || | ||| | ||| | || ||| |||| Sbjct 45 TGTTCAAAAGGAATCCACCCTCCATCTTGTTCTTCGATTAAGAGG 1 >seq1253 Length=11614 Score = 102 bits (112), Expect = 1e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 124615 TAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTG 124674 ||||| || || ||||| || ||||||||||| || ||||||||||| | ||||||| Sbjct 11562 TAAAATCTAAGATCCAAGACAAGGAAGGTATACCTCCAGATCAACAAAGATTGATTTTTG 11503 Query 124675 CAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAA 124734 | ||||||||||| || ||| | |||| | || || ||| ||||||| ||||| | Sbjct 11502 CTGGAAAACAATTGGAAGATGGAAGAACCCTTTCGGACTACAATGTTCAAAAGGAATCCA 11443 Query 124735 CTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 | | ||| | ||| | || ||| ||||||| Sbjct 11442 CCCTCCATCTTGTTCTTCGATTAAGAGGTGG 11412 >seq724 Length=87760 Score = 89.7 bits (98), Expect = 8e-13 Identities = 128/177 (72%), Gaps = 5/177 (3%) Strand=Plus/Minus Query 202697 TGTATGttataataaatataagtctaattg---ttatttttataatattttttaataaat 202753 |||||| ||| |||| ||||| | | | |||| | || | || || ||||||| Sbjct 25678 TGTATGCTATGTTAAAGCTAAGTTTTTTAGATTTTATATCTAGAGTAGGATTGAATAAAT 25619 Query 202754 aaatCAACATCAAATTTACGTCTA-CATCCTTCATAACTCATATATCTAATTTTACCAAA 202812 | ||||||||||| | | || || || || || ||||||||||||| ||||| Sbjct 25618 TTTTTTACATCAAATTTTC-TATAGCAACCGTCTAAATTCATATATCTAATAAGCCCAAA 25560 Query 202813 TATTGGTCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCC 202869 ||||| ||||||||||| | ||||||||| | |||| ||||||||| | ||| || Sbjct 25559 AATTGGCCTTTCTTTCCAAGGTCTATCATGTACTCCACCAATTGACCATAAACAACC 25503 Score = 86.0 bits (94), Expect = 9e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 202946 GGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAATATCCATGCATT 203005 |||| ||||||||||| |||||||||||| ||||||||| | |||| | ||||||||| Sbjct 25381 GGTGTATTTGTCCATTCCAATATTTTTTTACACCAATACATACGTAAAAAACCATGCATT 25322 Query 203006 TTACCATAGATAATCATTTG 203025 |||||| || |||||||| Sbjct 25321 TTACCACTTATCATCATTTG 25302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755440541481600