Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1466 82.4 7e-11 seq1258 82.4 7e-11 seq1155 82.4 7e-11 >seq1466 Length=125466 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | ||| | ||||| || | ||| || || ||||||| || ||||| Sbjct 71679 TACCTCCACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATC-- 71622 Query 118570 TCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 | | |||| | ||| || || || ||||||||| | || || | ||| ||||| || Sbjct 71621 TGAAAGTGTTCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGG 71562 Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTC 118687 || || || || |||||| |||||| ||| || | ||| | || || | || Sbjct 71561 TGGAATACCTTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTC 71502 Query 118688 GACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || || | ||||||| |||||||||||| Sbjct 71501 AACTTCAAGAGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 71451 >seq1258 Length=100613 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | ||| | ||||| || | ||| || || ||||||| || ||||| Sbjct 40438 TACCTCCACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATC-- 40381 Query 118570 TCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 | | |||| | ||| || || || ||||||||| | || || | ||| ||||| || Sbjct 40380 TGAAAGTGTTCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGG 40321 Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTC 118687 || || || || |||||| |||||| ||| || | ||| | || || | || Sbjct 40320 TGGAATACCTTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTC 40261 Query 118688 GACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || || | ||||||| |||||||||||| Sbjct 40260 AACTTCAAGAGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 40210 >seq1155 Length=100669 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | ||| | ||||| || | ||| || || ||||||| || ||||| Sbjct 60232 TACCTCCACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATC-- 60289 Query 118570 TCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 | | |||| | ||| || || || ||||||||| | || || | ||| ||||| || Sbjct 60290 TGAAAGTGTTCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGG 60349 Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTC 118687 || || || || |||||| |||||| ||| || | ||| | || || | || Sbjct 60350 TGGAATACCTTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTC 60409 Query 118688 GACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || || | ||||||| |||||||||||| Sbjct 60410 AACTTCAAGAGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 60460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433821744676804