Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1466 120 5e-22 seq1258 120 5e-22 seq1155 120 5e-22 seq630 113 7e-20 seq1253 107 3e-18 >seq1466 Length=125466 Score = 120 bits (132), Expect = 5e-22 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 || || | |||||||| ||||||||| | || ||||| ||| || | |||||||||||| Sbjct 71677 CCTCCACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGA-ACATTATAATCTGA 71619 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| ||||| | ||| || | ||| |||||||| || |||| ||| || ||||| || || Sbjct 71618 AAGTGTTCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGG 71559 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||| |||||||| ||||| |||||| || || || Sbjct 71558 AATACCTTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAAC 71499 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||| || || || ||||| || ||||||||||| || || || ||||| Sbjct 71498 TTCAAGAGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 71451 >seq1258 Length=100613 Score = 120 bits (132), Expect = 5e-22 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 || || | |||||||| ||||||||| | || ||||| ||| || | |||||||||||| Sbjct 40436 CCTCCACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGA-ACATTATAATCTGA 40378 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| ||||| | ||| || | ||| |||||||| || |||| ||| || ||||| || || Sbjct 40377 AAGTGTTCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGG 40318 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||| |||||||| ||||| |||||| || || || Sbjct 40317 AATACCTTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAAC 40258 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||| || || || ||||| || ||||||||||| || || || ||||| Sbjct 40257 TTCAAGAGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 40210 >seq1155 Length=100669 Score = 120 bits (132), Expect = 5e-22 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 || || | |||||||| ||||||||| | || ||||| ||| || | |||||||||||| Sbjct 60234 CCTCCACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGA-ACATTATAATCTGA 60292 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| ||||| | ||| || | ||| |||||||| || |||| ||| || ||||| || || Sbjct 60293 AAGTGTTCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGG 60352 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||| |||||||| ||||| |||||| || || || Sbjct 60353 AATACCTTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAAC 60412 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||| || || || ||||| || ||||||||||| || || || ||||| Sbjct 60413 TTCAAGAGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 60460 >seq630 Length=36350 Score = 113 bits (124), Expect = 7e-20 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 146081 GTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 || ||||| ||| || | ||| || || ||||| ||||| | ||| || ||||||||||| Sbjct 28 GTGGATTCCTTTTGA-ACATTGTAGTCCGAAAGGGTTCTTCCATCTTCCAATTGTTTTCC 86 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNN 146199 |||||||||||||||||| ||||| ||||| || ||||| || ||||| Sbjct 87 AGCAAAAATCAATCTTTGTTGATCTGGAGGTATACCTTCCTTGTCTTGGATCTTAGATTT 146 Query 146200 NNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGT 146259 ||| || ||| || ||||| ||||| || ||||| || |||| ||| Sbjct 147 TACATTTTCAATAGTGTCAGAAGGATCCACTTCAAGTGTAATAGTTTTTCCAGTTAGTGT 206 Query 146260 TTTAATGAATATTTGCATT 146278 |||||| || || |||||| Sbjct 207 TTTAATAAAAATCTGCATT 225 >seq1253 Length=11614 Score = 107 bits (118), Expect = 3e-18 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | || | || | ||| | || ||||| ||| || | ||| || || || Sbjct 11412 CCACCTCTTAATCGAAGAACAAGATGGAGGGTGGATTCCTTTTGA-ACATTGTAGTCCGA 11470 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| ||||| | ||| || ||||||||||||||||||||||||||||| ||||| ||||| Sbjct 11471 AAGGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCTGGAGG 11530 Query 146170 AATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 11531 TATACCTTCCTTGTCTTG 11548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743511185591040