Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1531 125 7e-24 seq1530 125 7e-24 >seq1531 Length=18023 Score = 125 bits (138), Expect = 7e-24 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 |||||| || || |||| ||| ||||||||||| ||||||||||| || || || || || Sbjct 8611 AATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCAATTTG 8670 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAA 16623 ||| ||||||||| ||||||| || | |||||||||| ||| | ||| | | Sbjct 8671 AAATCCATAAAAGAATCTAGCCTCAGGCCATTGTACTTCATTTGCAAAACATTCAACCAG 8730 Query 16624 GTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAT 16682 |||||| ||||| || ||||| ||||| ||||| || || | ||| || ||||||| Sbjct 8731 GTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATATAAAAT 8789 Score = 107 bits (118), Expect = 2e-18 Identities = 170/242 (70%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 16069 ATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAAC 16128 ||| || |||||||||||||||| ||| | |||| |||||||| || | || || Sbjct 8065 ATCAGCTACAAATTCTATATACTTACACATATCAGCACAATTCATTCCAATAAGATTCAC 8124 Query 16129 AGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCT 16188 ||| | ||||| | ||||| | |||||| |||| ||| |||||| |||| || | | | Sbjct 8125 AGGTAAAGCTTCACTGAAAAATTCTTTTTCAATATCAACTGCTTCAGTGATAATTTGTTT 8184 Query 16189 TACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACA 16248 |||| | | | | || || | || || |||||||||| |||||||||||| Sbjct 8185 GACTAAATCAAATGATGGTTTGTATTTTATGTAGTTAAACATTAAGCAAGCAAAATCAGT 8244 Query 16249 ATGCAATCCTTCGTCCCTACTTATTAACTCGTT--TGAAAATGTAAGACCTGGCATTAGT 16306 || | |||||| || ||||| || | || || ||||| ||| || ||||| ||| Sbjct 8245 GTGAAGTCCTTCATCTCTACTGATAAGTTCATTACTGAAA--CAAAGTCCAGGCATAAGT 8302 Query 16307 CC 16308 || Sbjct 8303 CC 8304 >seq1530 Length=18023 Score = 125 bits (138), Expect = 7e-24 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 |||||| || || |||| ||| ||||||||||| ||||||||||| || || || || || Sbjct 8611 AATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCAATTTG 8670 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAA 16623 ||| ||||||||| ||||||| || | |||||||||| ||| | ||| | | Sbjct 8671 AAATCCATAAAAGAATCTAGCCTCAGGCCATTGTACTTCATTTGCAAAACATTCAACCAG 8730 Query 16624 GTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAT 16682 |||||| ||||| || ||||| ||||| ||||| || || | ||| || ||||||| Sbjct 8731 GTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATATAAAAT 8789 Score = 107 bits (118), Expect = 2e-18 Identities = 170/242 (70%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 16069 ATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAAC 16128 ||| || |||||||||||||||| ||| | |||| |||||||| || | || || Sbjct 8065 ATCAGCTACAAATTCTATATACTTACACATATCAGCACAATTCATTCCAATAAGATTCAC 8124 Query 16129 AGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCT 16188 ||| | ||||| | ||||| | |||||| |||| ||| |||||| |||| || | | | Sbjct 8125 AGGTAAAGCTTCACTGAAAAATTCTTTTTCAATATCAACTGCTTCAGTGATAATTTGTTT 8184 Query 16189 TACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACA 16248 |||| | | | | || || | || || |||||||||| |||||||||||| Sbjct 8185 GACTAAATCAAATGATGGTTTGTATTTTATGTAGTTAAACATTAAGCAAGCAAAATCAGT 8244 Query 16249 ATGCAATCCTTCGTCCCTACTTATTAACTCGTT--TGAAAATGTAAGACCTGGCATTAGT 16306 || | |||||| || ||||| || | || || ||||| ||| || ||||| ||| Sbjct 8245 GTGAAGTCCTTCATCTCTACTGATAAGTTCATTACTGAAA--CAAAGTCCAGGCATAAGT 8302 Query 16307 CC 16308 || Sbjct 8303 CC 8304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462502535848200