Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1531 163 3e-35 seq1530 163 3e-35 >seq1531 Length=18023 Score = 163 bits (180), Expect = 3e-35 Identities = 165/207 (80%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 14434 AATAGCATTAAATAAATGT-TCCTTCTCTT-TAGTACTTGAAATGTATGTATCAATAAGT 14491 || ||| ||||| || ||| ||||| ||| | || ||| || | ||||| ||||| | | Sbjct 8572 AAGAGCTTTAAA-AAGTGTGTCCTTTTCTGCTGGTTCTTTAA-TATATGTTTCAATTAAT 8629 Query 14492 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTA 14551 ||||||||||||||||| || || ||||| ||||| || ||||| |||||||| ||||| Sbjct 8630 AAGCTATACATTTCAGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAGAATCTA 8689 Query 14552 GCTTCTGACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACC 14610 || || | ||||||||| || | | |||| | ||| ||| ||||||||||| ||||| Sbjct 8690 GCCTCAGGCCATTGTACTTCATTTGCAAAA-CATTCAACCAGGTTTTCATTAACAATACC 8748 Query 14611 ATCACTAGCTGCAAAAAATGCCAATAT 14637 ||||||||| ||||| ||||||||||| Sbjct 8749 ATCACTAGCAGCAAAGAATGCCAATAT 8775 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 |||||||| | ||||| ||||||||| ||||||||||||||||| || ||||||||| Sbjct 7891 TGATATTCCCCAACTCGTTTTTCAAAAAAGTTAGTTTTACCTTCTAGGCTGATATTTTCC 7950 Query 13976 ATAAAATCAAATGGATT 13992 |||||||| |||||||| Sbjct 7951 ATAAAATCGAATGGATT 7967 >seq1530 Length=18023 Score = 163 bits (180), Expect = 3e-35 Identities = 165/207 (80%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 14434 AATAGCATTAAATAAATGT-TCCTTCTCTT-TAGTACTTGAAATGTATGTATCAATAAGT 14491 || ||| ||||| || ||| ||||| ||| | || ||| || | ||||| ||||| | | Sbjct 8572 AAGAGCTTTAAA-AAGTGTGTCCTTTTCTGCTGGTTCTTTAA-TATATGTTTCAATTAAT 8629 Query 14492 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTA 14551 ||||||||||||||||| || || ||||| ||||| || ||||| |||||||| ||||| Sbjct 8630 AAGCTATACATTTCAGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAGAATCTA 8689 Query 14552 GCTTCTGACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACC 14610 || || | ||||||||| || | | |||| | ||| ||| ||||||||||| ||||| Sbjct 8690 GCCTCAGGCCATTGTACTTCATTTGCAAAA-CATTCAACCAGGTTTTCATTAACAATACC 8748 Query 14611 ATCACTAGCTGCAAAAAATGCCAATAT 14637 ||||||||| ||||| ||||||||||| Sbjct 8749 ATCACTAGCAGCAAAGAATGCCAATAT 8775 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 |||||||| | ||||| ||||||||| ||||||||||||||||| || ||||||||| Sbjct 7891 TGATATTCCCCAACTCGTTTTTCAAAAAAGTTAGTTTTACCTTCTAGGCTGATATTTTCC 7950 Query 13976 ATAAAATCAAATGGATT 13992 |||||||| |||||||| Sbjct 7951 ATAAAATCGAATGGATT 7967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482335730003160