Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1466 113 3e-20 seq1258 113 3e-20 seq1155 113 3e-20 seq630 93.3 3e-14 >seq1466 Length=125466 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || ||||| ||||||| |||||||||||||| ||||||| || || || | Sbjct 71677 CCTCCACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAA 71618 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| ||| |||||| | ||| || || || | || ||||| |||||||| || Sbjct 71617 AGTGTTCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGA 71558 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| || || ||||| ||||| | | | | ||| ||| || || | Sbjct 71557 ATACCTTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACT 71498 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || || |||| || || |||||||||| |||||| ||||| Sbjct 71497 TCAAGAGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 71451 >seq1258 Length=100613 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || ||||| ||||||| |||||||||||||| ||||||| || || || | Sbjct 40436 CCTCCACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAA 40377 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| ||| |||||| | ||| || || || | || ||||| |||||||| || Sbjct 40376 AGTGTTCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGA 40317 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| || || ||||| ||||| | | | | ||| ||| || || | Sbjct 40316 ATACCTTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACT 40257 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || || |||| || || |||||||||| |||||| ||||| Sbjct 40256 TCAAGAGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 40210 >seq1155 Length=100669 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || ||||| ||||||| |||||||||||||| ||||||| || || || | Sbjct 60234 CCTCCACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAA 60293 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| ||| |||||| | ||| || || || | || ||||| |||||||| || Sbjct 60294 AGTGTTCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGA 60353 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| || || ||||| ||||| | | | | ||| ||| || || | Sbjct 60354 ATACCTTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACT 60413 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || || |||| || || |||||||||| |||||| ||||| Sbjct 60414 TCAAGAGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 60460 >seq630 Length=36350 Score = 93.3 bits (102), Expect = 3e-14 Identities = 155/222 (70%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 18107 TAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTT 18166 || || ||| || | || || || ||||| ||||||| |||||||| | | ||| | Sbjct 6 TAATCGAAGAACAAGATGGAGGGTGGATTCCTTTTGAACATTGTAGTCCGAAAGGGTTCT 65 Query 18167 ACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTC 18226 | ||||||||||||||| || ||| | || | |||||||||||| || | ||||| Sbjct 66 TCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCTGGAGGTATACCTTC 125 Query 18227 CTTATC--GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATG 18284 ||| || || || | | || || | | ||| ||||||| || || ||||| Sbjct 126 CTTGTCTTGGATCTTAGAT--TTTACATTTTCAATAGTGTCAGAAGGATCCACTTCAAGT 183 Query 18285 GTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || |||| || || | |||||| | |||||| |||||| Sbjct 184 GTAATAGTTTTTCCAGTTAGTGTTTTAATAAAAATCTGCATT 225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379336431731565