Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1531 109 5e-19 seq1530 109 5e-19 seq1466 98.7 9e-16 seq1258 98.7 9e-16 seq1155 98.7 9e-16 >seq1531 Length=18023 Score = 109 bits (120), Expect = 5e-19 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 57668 TGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAA 57727 ||||||| ||||||| || | ||||| || || || || |||||||||||||| Sbjct 8797 TGAGAGACATTTTATATCCCATATATTGGCATTCTTTGCTGCTAGTGATGGTATTGTTAA 8738 Query 57728 CGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTA 57787 || || |||| ||| | ||| || | ||||| ||| | | ||||| |||| |||||| Sbjct 8737 TGAAAACCTGGTTGAATGTTTTGCAAATGAAGTACAATGGCCTGAGGCTAGATTCTTTTA 8678 Query 57788 CGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTAT 57830 ||||||||| | || |||||||| | ||||| ||||||||| Sbjct 8677 TGGATTTCAAATTGCTATTGAAAATATTCATTCTGAAATGTAT 8635 >seq1530 Length=18023 Score = 109 bits (120), Expect = 5e-19 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 57668 TGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAA 57727 ||||||| ||||||| || | ||||| || || || || |||||||||||||| Sbjct 8797 TGAGAGACATTTTATATCCCATATATTGGCATTCTTTGCTGCTAGTGATGGTATTGTTAA 8738 Query 57728 CGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTA 57787 || || |||| ||| | ||| || | ||||| ||| | | ||||| |||| |||||| Sbjct 8737 TGAAAACCTGGTTGAATGTTTTGCAAATGAAGTACAATGGCCTGAGGCTAGATTCTTTTA 8678 Query 57788 CGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTAT 57830 ||||||||| | || |||||||| | ||||| ||||||||| Sbjct 8677 TGGATTTCAAATTGCTATTGAAAATATTCATTCTGAAATGTAT 8635 >seq1466 Length=125466 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| |||| || | || || ||||| || || | || ||||| || || Sbjct 71451 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGACCCATCT 71510 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| |||||| | ||| ||||| ||||| | || || || || Sbjct 71511 GATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 71570 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || ||||||||||| || || | ||||| || || | |||||||| Sbjct 71571 CAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCAGATTATAAT 71630 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||| ||||| || |||||| ||||||| ||||| | || |||| Sbjct 71631 GTTCAAAAGGAATCAACACTTCATTTGGTACTAAGACTTCGTGGAGGTA 71679 >seq1258 Length=100613 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| |||| || | || || ||||| || || | || ||||| || || Sbjct 40210 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGACCCATCT 40269 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| |||||| | ||| ||||| ||||| | || || || || Sbjct 40270 GATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 40329 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || ||||||||||| || || | ||||| || || | |||||||| Sbjct 40330 CAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCAGATTATAAT 40389 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||| ||||| || |||||| ||||||| ||||| | || |||| Sbjct 40390 GTTCAAAAGGAATCAACACTTCATTTGGTACTAAGACTTCGTGGAGGTA 40438 >seq1155 Length=100669 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| |||| || | || || ||||| || || | || ||||| || || Sbjct 60460 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGACCCATCT 60401 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| |||||| | ||| ||||| ||||| | || || || || Sbjct 60400 GATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 60341 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || ||||||||||| || || | ||||| || || | |||||||| Sbjct 60340 CAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCAGATTATAAT 60281 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||| ||||| || |||||| ||||||| ||||| | || |||| Sbjct 60280 GTTCAAAAGGAATCAACACTTCATTTGGTACTAAGACTTCGTGGAGGTA 60232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445757278505040