Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq62 410 2e-109 seq1531 127 3e-24 seq1530 127 3e-24 >seq62 Length=56742 Score = 410 bits (454), Expect = 2e-109 Identities = 1062/1605 (66%), Gaps = 39/1605 (2%) Strand=Plus/Minus Query 62324 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTT 62383 ||| || || ||||||||||| | ||| | ||| | || || | || | ||| Sbjct 51841 ATTTTTTATATCATCATTCCAAATATTTAAATTAACCAAATCGCTTAGTAAATACTTGTT 51782 Query 62384 AACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 62443 |||||||| ||||| || || || || | | || |||||||| || ||| | ||||| Sbjct 51781 TACTACTTGAAATTCACCTGATAAAACACGTCTAGAATAAATATTGCTCGTAAAAGGTTC 51722 Query 62444 CACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 62503 | | |||||||| || | |||||| | ||| ||||| || |||||||||| | ||| Sbjct 51721 AAAAGCTTCATTATTGCCGAGAATTTGTGAAGTAGATGCTGTAGGCATAGGTGAAATCAA 51662 Query 62504 TAAACTATTTCTAAGACCGTATGTTCTGATTTTAT-CTTTTAGATGTTCCCAATTCCAAA 62562 | |||||||||| ||| || || | || | | ||| | |||||| ||| ||||| Sbjct 51661 AAGGCTATTTCTAACACCATACTTTTTTATATCTTGCTTCAACGTGTTCC-AATCCCAAA 51603 Query 62563 GATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGAT 62621 |||| | || ||| ||| || ||||| || | ||| | || | Sbjct 51602 GATCAGTAGGCGTTACATTCCACATATCATACTGAAGAATTCCCTGGCTGATAGGACTA- 51544 Query 62622 CCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCA 62681 ||| | ||||| |||||||| || | | | ||||| || ||| || || | ||| Sbjct 51543 CCTTCGTATGTTTCATATGGACCATATTCTTTAGCTAATTCACATGATGCTTCAAGCGCA 51484 Query 62682 CCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAAT 62741 || | |||||| |||||||| || | |||||| | || ||||| || ||||| Sbjct 51483 CCATGATAAATTGTTTCAAATATTTGTATATTTAATTTTTTAGCTTCTTCACTGTCAAAA 51424 Query 62742 GGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTA 62801 || |||| | | ||| || || ||||||||||| ||||||| || || || ||| Sbjct 51423 GGCATCCTTAATAATACAAATGCATCAGCTAATCCTTGTACACCAACTCCAATTGGCCTA 51364 Query 62802 TGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 62861 || | | | || || | | ||||| ||||||||| | || |||| |||| ||| Sbjct 51363 TGACGCATGTTTGAATTATAGGCTTCAATAATAGGATAGAAGTTTCTATCAATAACTTTG 51304 Query 62862 TTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC----- 62916 || | ||| | ||| ||||| || | ||||| ||||| |||| Sbjct 51303 TTTAAATTACGAACAGCAACTTTTGTAACGGTATGAAGTTTATCAAAATGAAATACATTA 51244 Query 62917 ---------GCCC---ATCTATTACAAACA--TGTTCAATGCAACA--GATGCCAGATTA 62960 | | || || | ||||| | || || | | | ||||| | ||| Sbjct 51243 GTTGAATCGGTACTAGATTTAGGATAAACAAATTTTGAAAGAGATAACGATGCTAAATTG 51184 Query 62961 CACACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 63018 ||||| || ||||| | || | |||| ||||| || ||||| ||||| ||| Sbjct 51183 CACACAGCAGTCTCATCCTTTGATGAG--TATTCAATTATTTCTGTGCACAGATTGCTAG 51126 Query 63019 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63078 |||| ||| || | ||||| |||||| || || | ||||| ||||| || ||||| | Sbjct 51125 ACTTAATAACACCAAGATTTTTTTGATTGCTTTTACTATTACAAGCATCTTTGTAAAGCA 51066 Query 63079 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 63138 | | || |||||||||||| |||| ||||| || ||| | | |||| | Sbjct 51065 TATAAGGTTGACCAGTTTCAATTTGAGCTTCTAGTATGAAAAACCATAGTTTTTGAGCTT 51006 Query 63139 TTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGT 63198 ||| | |||||||| || |||| |||| || | |||| | ||| |||| | Sbjct 51005 CAATTTGACGTTTGTATCGCCCTTCTTTTTCATACTTTATGTACAGTTCTTCAAACTTTT 50946 Query 63199 CTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 63258 | || || || | || ||| ||||||| || ||||| | ||||| ||| | Sbjct 50945 CACCGTAACAATCCGAAAGTCCAGGGCATTCATGAGGGCACATAAGTGACCAGATTCCAT 50886 Query 63259 CATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCT 63316 | | ||| |||||||||||||| | ||| || ||||| | || ||| || ||||| || Sbjct 50885 TA-CTTTCTACTCGTTTCATAAACAAATCTGGTATCCATAAGGC-ATAGAAAAGATCCCT 50828 Query 63317 TGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 63376 | | | ||||| | || ||||| ||| |||||| | || | | ||||| | Sbjct 50827 AGCACGAATATCCTCACTACCAGTATTTTTTCGAAGATCTAAAAATTCTACTATATCGGC 50768 Query 63377 ATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTAT 63436 |||||| || || || |||||||| | || || || |||||||| || || || | Sbjct 50767 ATGCCATGGCTCTAAATATATGGCAAATGAGCCTGGACGCTTGTTTCCACCTTGGTCAAC 50708 Query 63437 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATT 63496 ||| | || || || ||||||| || | ||||| ||| || || || ||||||| Sbjct 50707 GTAACGAGAACAATTGTTGTAAACTCGTAAAAGTGGAACAATTCCATTAGAATTACCATT 50648 Query 63497 GGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCC 63556 || || | ||||| |||| || ||||||||| ||| ||| || | ||| || Sbjct 50647 CGTTCCTGCAATATATGTACCACAAGCTCGAATATTATGAATATGTAGTCCCACTCCACC 50588 Query 63557 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGT--CATAGATGCCTTCTATGCTA 63614 || | ||| ||||| | || || ||||| | |||| || | || |||||||||||| Sbjct 50587 GGCAAATTTGGAGATCATAGCACA--GTTTTTAAGTGTATCAAATATACCTTCTATGCTA 50530 Query 63615 TCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTA 63674 || || |||| | | |||||| ||||||||||| |||||| ||||| ||||| Sbjct 50529 TCGTCTTTCATTGCCAACAAAAAACAACTAGACATTTGAGGACGAGGTGTTCCAGCATTG 50470 Query 63675 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG-TAGATTGTACGTCTCAAT 63733 |||||||| |||| || || |||||||| ||| || | ||| || || || || || Sbjct 50469 AATAAGGTTGGAGTTGCATGAGTAAACCAACGTTCTGACATATAG-TTATATGTTTCTAT 50411 Query 63734 AGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63793 || || || ||||| ||| || || || || || | ||| ||||| || ||||| Sbjct 50410 TGCAGATTCAATATCATCAAAATGTATACCAACAGCAACTCTCATCAACATATGTTGAGG 50351 Query 63794 TCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 63853 |||||| |||||||| | ||| |||| | || ||| |||| | ||||||||||| Sbjct 50350 TCTTTCCACAATTTTTCCATCTATCTTCATTAGATAAGATCTTTCAAGGGTTTTAAAACC 50291 Query 63854 AAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 63898 ||||||| || | |||||| | |||| ||| | ||||| Sbjct 50290 AAAATAGGAATAATCATAGTCTCTATGATAAACTATAGCTGAATT 50246 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 64021 TTGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGAT 64080 ||||||| ||||| ||||| |||| | ||||| || |||| ||| |||||||| |||| Sbjct 49460 TTGTTTCTTTGTGGAGATTAGATACAACAATTCTAGCAGCTAAAATAGCATAATCTGGAT 49401 Query 64081 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 64140 || ||||||| | || || ||||| || || | | || | ||| | ||||||| Sbjct 49400 GTCGTGTAGTCATTGAAGCAGCAATTTCCGCAGCTAAGTTATCTAGTTCAATAGTTGTTA 49341 Query 64141 CTCCATTATATATTCCTTGAATAACCTT 64168 ||||| ||||||||| | |||||| || Sbjct 49340 CTCCAGCATATATTCCATTAATAACTTT 49313 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 62070 GGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGC 62129 || || | ||||| |||||||||||| ||||| ||||| ||||||| ||||| ||| Sbjct 52145 GGCTTTGAACGTAAATAGTACATTCCAGTTTTGAGACCTTTCTTCCATCCATAAAAGTGC 52086 Query 62130 ATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGA 62189 | ||| || || | | | || ||||| ||| ||||| | ||| ||||||||| Sbjct 52085 AAACTTGTCAGACGACCAAAGTTTGGCTCTGCCATAAATATATTGAGAGACTGACTTTGA 52026 Query 62190 TCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCA-ATTTCCCA 62248 || || ||||| || | || || ||||| | | | | ||| || | |||||||| Sbjct 52025 TCAATAAAGGCACCTCGATCAGCTGCCATGTCAACCA-AGGATTTCATGGACATTTCCCA 51967 Query 62249 AATAGTTTTATAAACTCGCTTAATATCTTCTGG 62281 |||||||||| || ||| | || |||||| Sbjct 51966 TGCTGTTTTATAAAGTCTCTTTAAATGTTCTGG 51934 >seq1531 Length=18023 Score = 127 bits (140), Expect = 3e-24 Identities = 143/186 (77%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 ||||||| ||| || || || || | ||||||||||| |||||||| |||||||| || Sbjct 8606 TCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCA 8665 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGCACTTC-TGTACAAAATCGTT 33960 || |||||||| || || |||||||||| || || || ||||| | | ||||| | || Sbjct 8666 ATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCAT-TGTACTTCATTTGCAAAA-CATT 8723 Query 33961 CTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTA 34020 | | | |||||||| || || |||||||| || ||||| || ||||||| ||| || Sbjct 8724 CAACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATA 8783 Query 34021 TAAAAT 34026 |||||| Sbjct 8784 TAAAAT 8789 >seq1530 Length=18023 Score = 127 bits (140), Expect = 3e-24 Identities = 143/186 (77%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 ||||||| ||| || || || || | ||||||||||| |||||||| |||||||| || Sbjct 8606 TCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCA 8665 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGCACTTC-TGTACAAAATCGTT 33960 || |||||||| || || |||||||||| || || || ||||| | | ||||| | || Sbjct 8666 ATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCAT-TGTACTTCATTTGCAAAA-CATT 8723 Query 33961 CTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTA 34020 | | | |||||||| || || |||||||| || ||||| || ||||||| ||| || Sbjct 8724 CAACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATA 8783 Query 34021 TAAAAT 34026 |||||| Sbjct 8784 TAAAAT 8789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629804712357360