Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq62 437 8e-118 seq1531 140 3e-28 seq1530 140 3e-28 >seq62 Length=56742 Score = 437 bits (484), Expect = 8e-118 Identities = 1085/1623 (67%), Gaps = 53/1623 (3%) Strand=Plus/Minus Query 37044 TTGAATAGAACCATTAT--GTAACACAATTGTATTCTTTATGTCATTATTCCACATATTT 37101 ||||| |||||||| | | || | | ||| ||| ||||| |||| |||||| |||||| Sbjct 51871 TTGAACTGAACCATTGTTGGCAATA-AGTTG-ATTTTTTATATCATCATTCCAAATATTT 51814 Query 37102 CTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACT 37161 | | | | || || | || | ||||| || ||||| || || ||||| || Sbjct 51813 AAATTAACCAAATCGCTTAGTAAATACTTGTTTACTACTTGAAATTCACCTGATAAAACA 51754 Query 37162 CTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGA 37221 | ||| | ||| |||||||| ||| | ||||||| | |||||||| | | ||||| Sbjct 51753 CGTCTAGAATAAATATTGCTCGTAAAAGGTTCAAAAGCTTCATTATTGCCGAGAATTTGT 51694 Query 37222 GATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTA 37281 || |||||||| |||||||| |||| || | |||||||||||| | |||| | || Sbjct 51693 GAAGTAGATGCTGTAGGCATAGGTGAAATCAAAAGGCTATTTCTAACACCATACTTTTTT 51634 Query 37282 ATTCTCTTTTTT-AGTTCATTCCAATCCCATAAATCTGTTGG-GTT-CTTTAACCACATA 37338 || |||| || | ||||||||||| | ||| || || ||| | || ||||||| Sbjct 51633 ATA-TCTTGCTTCAACGTGTTCCAATCCCAAAGATCAGTAGGCGTTACATT--CCACATA 51577 Query 37339 TCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAA 37398 ||||| || ||||| || | || ||| | | | ||||| ||||| || || || Sbjct 51576 TCATACTGAAGAATTCCCTGGCTGATAGGACTACCTTCGTATGTTTCATATGGACCATAT 51517 Query 37399 ATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGT 37458 |||||||| ||| || | ||| || || ||| ||| |||||||| || |||||| Sbjct 51516 TCTTTAGCTAATTCACATGATGCTTCAAGCGCACCATGATAAATTGTTTCAAATATTTGT 51457 Query 37459 ATATTTAATATTTTTGCTTCTTCGCTATCGAATG-CATAGCCCAATAATATAAACACATC 37517 ||||||||| |||| |||||||| || || || | ||| | ||||||| ||| |||| Sbjct 51456 ATATTTAATTTTTTAGCTTCTTCACTGTCAAAAGGCATC-CTTAATAATACAAATGCATC 51398 Query 37518 AGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTC 37577 ||| || || || ||||| | || || || ||||| | | || || || | | ||| Sbjct 51397 AGCTAATCCTTGTACACCAACTCCAATTGGCCTATGACGCATGTTTGAATTATAGGCTTC 51338 Query 37578 TATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGT 37637 || | ||||| | || |||| || | ||| |||| ||| ||| | ||| || Sbjct 51337 AATAATAGGATAGAAGTTTCTATCAATAACTTTGTTTAAATTACGAACAGCAACTTTTGT 51278 Query 37638 AATTATTCTCAACTTGTCGAACATAAATACGTTATT---------------------ATT 37676 || | | || || || |||||| ||| | || Sbjct 51277 AACGGTATGAAGTTTATCAAAATGAAATACATTAGTTGAATCGGTACTAGATTTAGGATA 51218 Query 37677 AACAAATTTACTCAACGAAATA--GATCCTAGATTACATACAGCAACTTCATCTTCGTTA 37734 ||||||||| | || || ||| ||| ||| ||| || |||||| ||||| | || Sbjct 51217 AACAAATTT--TGAAAGAGATAACGATGCTAAATTGCACACAGCAGTCTCATCCT--TTG 51162 Query 37735 CTAA--ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTT 37792 | | ||| || || ||||| || ||||| || || |||| || | ||| ||| Sbjct 51161 ATGAGTATTCAATTATTTCTGTGCACAGATTGCTAGACTTAATAACACCAAGATTTTTTT 51102 Query 37793 GATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTT 37852 ||||| ||| ||||||||| |||||| || || ||||| || || ||| |||| Sbjct 51101 GATTGCTTTTACTATTACAAGCATCTTTGTAAAGCATATAAGGTTGACCAGTTTCAATTT 51042 Query 37853 GAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAAC--GATCGCTTTAAttttt-t 37909 |||| || | || | ||||| || |||| || || || || || | Sbjct 51041 GAGCTTCTAGTATGAAAAACCATAGTTTTTGAGCTTCAATTTGA-CGTTTGTATCGCCCT 50983 Query 37910 tCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACA-TCGCATAAT 37968 ||||| ||| || | ||| || | || | ||| | ||| || ||| || | | | Sbjct 50982 TCTTT--TTCATACTTTATGTACAGTTCTTCAAACTT-TTCACCGTAACAATCCGAAAGT 50926 Query 37969 CCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATA 38028 || || ||||| || ||||| || ||||| | ||| ||||||| |||| |||| Sbjct 50925 CCAGGGCATTCATGAGGGCACATAAGTGACCAGATTCCATTACTTTCTACTCGTTTCATA 50866 Query 38029 AATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCT 38088 || ||||| |||| |||||| ||| || | ||| | | | | || || | || Sbjct 50865 AACAAATCTGGTATCCATAAGGCATAGAAAAGATCCCTAGCACGAATATCCTCACTACCA 50806 Query 38089 ACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAAT 38147 ||| |||| ||| | || ||| || | |||||| || |||||||| |||| ||| || Sbjct 50805 GTATTTTTTCG-AAGATCTAAAAATTCTACTATATCGGCATGCCATGGCTCTAAATATAT 50747 Query 38148 CGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATA 38207 | | || ||||| | || | || || || | || || | | || || || Sbjct 50746 GGCAAATGAGCCTGGACGCTTGTTTCCACCTTGGTCAACGTAACGAGAACAATTGTTGTA 50687 Query 38208 TATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACC 38267 | || ||| | || || || |||||||| || || || | || | ||||| ||||| Sbjct 50686 AACTCGTAAAAGTGGAACAATTCCATTAGAATTACCATTCGTTCCTGCAATATATGTACC 50627 Query 38268 CTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGC 38327 |||||| |||||| || | ||| | |||||| ||| ||| || || | ||| Sbjct 50626 ACAAGCTCGAATATTATGAATATGTAGTCCCACTCCACCGGCAAATTTGGAGATCATAGC 50567 Query 38328 GCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAA 38387 || | ||| | |||||||||||||||||||| || || || || |||| | | ||| Sbjct 50566 ACAGTTTTTAAGTGTATCAAATATACCTTCTATGCTATCGTCTTTCATTGCCAACAAAAA 50507 Query 38388 ACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTAT 38447 |||||||||||||||||| || ||||| || || ||||| || |||| |||||| | Sbjct 50506 ACAACTAGACATTTGAGGACGAGGTGTTCCAGCATTGAATAAGGTTGGAGTTGCATGAGT 50447 Query 38448 GAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTG 38507 ||||| ||| |||| ||| ||||||||||||||| || || |||||| | || Sbjct 50446 AAACCAACGTTCTGACATATAGTTATATGTTTCTATTGCAGATTCAATATCATCAAAATG 50387 Query 38508 AATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTG 38567 ||||| | || || ||||| | ||||||||| |||||||| | ||||| | ||| Sbjct 50386 TATACCAACAGCAACTCTCATCAACATATGTTGAGGTCTTTCCACAATTTT-TCCATCTA 50328 Query 38568 T-TTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTC 38626 | || | |||||| ||| |||| | ||||| | |||||||| ||| ||| |||| Sbjct 50327 TCTTCATTAGATAAGATCTTTCAAGGGTTTTAAAACCAAAATAGGAATAATCATAGTCTC 50268 Query 38627 TAT 38629 ||| Sbjct 50267 TAT 50265 >seq1531 Length=18023 Score = 140 bits (154), Expect = 3e-28 Identities = 140/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 11891 TCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCT 11950 ||| | | |||||| || |||||||| ||||||||||| |||||||||||||| ||||| Sbjct 8606 TCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCA 8665 Query 11951 ATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCC 12010 |||||||||||||| || ||| ||||| | || ||||| || ||| | ||| Sbjct 8666 ATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCATTGTACTTCATTTGCAAAACATTCA 8725 Query 12011 GCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATA 12070 | | || ||||| |||||||||||||||| ||||| ||||| | |||||| |||| Sbjct 8726 ACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATATA 8785 Query 12071 AA 12072 || Sbjct 8786 AA 8787 Score = 113 bits (124), Expect = 4e-20 Identities = 158/217 (73%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 11464 ATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCAC 11523 ||| || || ||||||||||||| | |||| | ||||||||| || ||||||| ||| Sbjct 8065 ATCAGCTACAAATTCTATATACTTACACATATCAGCACAATTCATTCCAATAAGATTCAC 8124 Query 11524 CGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGT 11583 || | ||| | | ||||| || ||||| |||| ||| || ||| |||| || || Sbjct 8125 AGGTAAAGCTTCACTGAAAAATTCTTTTTCAATATCAACTGCTTCAGTGATAAT--TTGT 8182 Query 11584 TATAACTTCCTTAGATGGTGG-ATGTAATAAATGT--TTAAACATTAAACACGCAAAATC 11640 | | ||| | | ||| ||| |||| | |||| ||||||||||| || |||||||| Sbjct 8183 T-TGACTAAATCAAATGATGGTTTGTATTTTATGTAGTTAAACATTAAGCAAGCAAAATC 8241 Query 11641 ACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTA 11677 | || | ||||| |||||||| || ||||||||| Sbjct 8242 AGTGTGAAGTCCTTCATCTCTACTGATAAGTTCATTA 8278 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 12095 TTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCC 12154 |||| ||| || |||| ||| | ||||| |||||||| ||||| |||||||| |||| Sbjct 8860 TTATTCCAGTCGGCTAAGTCTCTCGATAAGTCTACTTCCTCAACTGTCCAAAATGATGCC 8919 Query 12155 ACTGATTGTTTATACATTTTCCAGATATCAT 12185 || | | | |||||||||| ||||||||||| Sbjct 8920 ACAGCTCGCTTATACATTTCCCAGATATCAT 8950 >seq1530 Length=18023 Score = 140 bits (154), Expect = 3e-28 Identities = 140/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 11891 TCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCT 11950 ||| | | |||||| || |||||||| ||||||||||| |||||||||||||| ||||| Sbjct 8606 TCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCA 8665 Query 11951 ATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCC 12010 |||||||||||||| || ||| ||||| | || ||||| || ||| | ||| Sbjct 8666 ATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCATTGTACTTCATTTGCAAAACATTCA 8725 Query 12011 GCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATA 12070 | | || ||||| |||||||||||||||| ||||| ||||| | |||||| |||| Sbjct 8726 ACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATATA 8785 Query 12071 AA 12072 || Sbjct 8786 AA 8787 Score = 113 bits (124), Expect = 4e-20 Identities = 158/217 (73%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 11464 ATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCAC 11523 ||| || || ||||||||||||| | |||| | ||||||||| || ||||||| ||| Sbjct 8065 ATCAGCTACAAATTCTATATACTTACACATATCAGCACAATTCATTCCAATAAGATTCAC 8124 Query 11524 CGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGT 11583 || | ||| | | ||||| || ||||| |||| ||| || ||| |||| || || Sbjct 8125 AGGTAAAGCTTCACTGAAAAATTCTTTTTCAATATCAACTGCTTCAGTGATAAT--TTGT 8182 Query 11584 TATAACTTCCTTAGATGGTGG-ATGTAATAAATGT--TTAAACATTAAACACGCAAAATC 11640 | | ||| | | ||| ||| |||| | |||| ||||||||||| || |||||||| Sbjct 8183 T-TGACTAAATCAAATGATGGTTTGTATTTTATGTAGTTAAACATTAAGCAAGCAAAATC 8241 Query 11641 ACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTA 11677 | || | ||||| |||||||| || ||||||||| Sbjct 8242 AGTGTGAAGTCCTTCATCTCTACTGATAAGTTCATTA 8278 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 12095 TTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCC 12154 |||| ||| || |||| ||| | ||||| |||||||| ||||| |||||||| |||| Sbjct 8860 TTATTCCAGTCGGCTAAGTCTCTCGATAAGTCTACTTCCTCAACTGTCCAAAATGATGCC 8919 Query 12155 ACTGATTGTTTATACATTTTCCAGATATCAT 12185 || | | | |||||||||| ||||||||||| Sbjct 8920 ACAGCTCGCTTATACATTTCCCAGATATCAT 8950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468515212811280