Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq62 372 4e-98 seq1531 143 4e-29 seq1530 143 4e-29 >seq62 Length=56742 Score = 372 bits (412), Expect = 4e-98 Identities = 1029/1567 (66%), Gaps = 39/1567 (2%) Strand=Plus/Minus Query 65117 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 65176 ||| || || ||||||||||| | ||| | ||| | || || | || | || Sbjct 51841 ATTTTTTATATCATCATTCCAAATATTTAAATTAACCAAATCGCTTAGTAAATACTTGTT 51782 Query 65177 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 65236 |||||||||||||| || || || || | | || |||||||| || ||| | ||||| Sbjct 51781 TACTACTTGAAATTCACCTGATAAAACACGTCTAGAATAAATATTGCTCGTAAAAGGTTC 51722 Query 65237 CACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 65296 | || |||||||| || | |||||| | ||| ||||| || |||||||||| | ||| Sbjct 51721 AAAAGCTTCATTATTGCCGAGAATTTGTGAAGTAGATGCTGTAGGCATAGGTGAAATCAA 51662 Query 65297 TAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT--TTAGAGGT-TCCCAATTCCA 65353 | |||||||||| ||| || || | || ||||| || | || | ||||| ||| Sbjct 51661 AAGGCTATTTCTAACACCATACTTTTTTAT---ATCTTGCTTCAACGTGTTCCAATCCCA 51605 Query 65354 AAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACG 65412 |||||| | || || || ||||| || | ||| | || Sbjct 51604 AAGATCAGTAGGCGTTACATTCCACATATCATACTGAAGAATTCCCTGGCTGATAGGACT 51545 Query 65413 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 65472 | ||| | ||||| || ||||| || | | | ||||| |||||| || || | | Sbjct 51544 A-CCTTCGTATGTTTCATATGGACCATATTCTTTAGCTAATTCACATGATGCTTCAAGCG 51486 Query 65473 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 65532 |||| | |||||| ||||| || || | |||||| | || ||||| || |||| Sbjct 51485 CACCATGATAAATTGTTTCAAATATTTGTATATTTAATTTTTTAGCTTCTTCACTGTCAA 51426 Query 65533 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 65592 | || |||| | | ||| || || ||||||||||| ||||||| || || || | Sbjct 51425 AAGGCATCCTTAATAATACAAATGCATCAGCTAATCCTTGTACACCAACTCCAATTGGCC 51366 Query 65593 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 65652 |||| | | | || || | | ||||| ||||||||| | || |||| |||| || Sbjct 51365 TATGACGCATGTTTGAATTATAGGCTTCAATAATAGGATAGAAGTTTCTATCAATAACTT 51306 Query 65653 TATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT---- 65708 | || | ||| | ||| ||||| || | ||||| ||||| |||| Sbjct 51305 TGTTTAAATTACGAACAGCAACTTTTGTAACGGTATGAAGTTTATCAAAATGAAATACAT 51246 Query 65709 ---------CGCTCATCTATT----ACAAACA--TGTTCAATGCAACA--GATGCCAGAT 65751 || | | ||| | ||||| | || || | | | ||||| | || Sbjct 51245 TAGTTGAATCGGTACTAGATTTAGGATAAACAAATTTTGAAAGAGATAACGATGCTAAAT 51186 Query 65752 TACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACT 65809 | || || || ||||| | || | |||| ||||| || ||||| ||||| || Sbjct 51185 TGCACACAGCAGTCTCATCCTTTGATGAG--TATTCAATTATTTCTGTGCACAGATTGCT 51128 Query 65810 ACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 65869 | |||| || || | ||||| |||||| || || | ||||| ||||| || ||||| Sbjct 51127 AGACTTAATAACACCAAGATTTTTTTGATTGCTTTTACTATTACAAGCATCTTTGTAAAG 51068 Query 65870 AATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC 65929 || | || |||||||||||| |||| ||||| || ||| | | |||| Sbjct 51067 CATATAAGGTTGACCAGTTTCAATTTGAGCTTCTAGTATGAAAAACCATAGTTTTTGAGC 51008 Query 65930 CTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTC 65989 | ||| | |||||||| | |||| |||| || | | |||| | ||| |||| Sbjct 51007 TTCAATTTGACGTTTGTATCGCCCTTCTTTTTCATACTTTATGTACAGTTCTTCAAACTT 50948 Query 65990 GTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCC 66049 || || || || | |||||| ||||||| || ||||| | ||||| ||| Sbjct 50947 TTCACCGTAACAATCCGAAAGTCCAGGGCATTCATGAGGGCACATAAGTGACCAGATTCC 50888 Query 66050 GTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAA-ATCT 66107 | | | ||| |||||||||||||| | ||| || ||||| | || ||| | || ||| Sbjct 50887 ATTA-CTTTCTACTCGTTTCATAAACAAATCTGGTATCCATAAGGC-ATAGAAAAGATCC 50830 Query 66108 CTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCA 66167 || | | | ||||| | || ||||| ||| |||||| | || | | ||||| Sbjct 50829 CTAGCACGAATATCCTCACTACCAGTATTTTTTCGAAGATCTAAAAATTCTACTATATCG 50770 Query 66168 TAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCT 66227 |||||| || || || |||||||| | || || || |||||||| || || || Sbjct 50769 GCATGCCATGGCTCTAAATATATGGCAAATGAGCCTGGACGCTTGTTTCCACCTTGGTCA 50710 Query 66228 ATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCA 66287 | ||| | || || || ||||||| || | ||||| ||| ||||| || ||||| Sbjct 50709 ACGTAACGAGAACAATTGTTGTAAACTCGTAAAAGTGGAACAATTCCATTAGAATTACCA 50650 Query 66288 TTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCC 66347 || || || | ||||| | |||| || ||||||||| ||| ||| || | ||| Sbjct 50649 TTCGTTCCTGCAATATATGTACCACAAGCTCGAATATTATGAATATGTAGTCCCACTCCA 50590 Query 66348 CCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTA 66407 || || | ||| ||||| | || || ||| | |||||| | || || ||||| ||| Sbjct 50589 CCGGCAAATTTGGAGATCATAGCACAGTTTTTAAGTGTATCAAATATACCTTCTATGCTA 50530 Query 66408 TCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTA 66467 || || |||| | | |||||| ||||||||||| ||||| ||||| ||||| Sbjct 50529 TCGTCTTTCATTGCCAACAAAAAACAACTAGACATTTGAGGACGAGGTGTTCCAGCATTG 50470 Query 66468 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG-TAGATTGTACGTCTCAAT 66526 |||||||| |||| || || |||||||| ||| || | ||| || || || || || Sbjct 50469 AATAAGGTTGGAGTTGCATGAGTAAACCAACGTTCTGACATATAG-TTATATGTTTCTAT 50411 Query 66527 AGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 66586 || || || ||||| ||| || || || || || | ||| ||||| || ||||| Sbjct 50410 TGCAGATTCAATATCATCAAAATGTATACCAACAGCAACTCTCATCAACATATGTTGAGG 50351 Query 66587 TCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 66646 |||||| || || || | ||| |||| | || ||| |||| | ||||||||||| Sbjct 50350 TCTTTCCACAATTTTTCCATCTATCTTCATTAGATAAGATCTTTCAAGGGTTTTAAAACC 50291 Query 66647 AAAATAG 66653 ||||||| Sbjct 50290 AAAATAG 50284 Score = 105 bits (116), Expect = 9e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 66814 TTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGAT 66873 ||||||||||||| ||||| ||||| | |||||||| |||| ||| |||||||| |||| Sbjct 49460 TTGTTTCTTTGTGGAGATTAGATACAACAATTCTAGCAGCTAAAATAGCATAATCTGGAT 49401 Query 66874 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 66933 || ||||||| | || || ||||| || || | | || | ||| | ||||||| Sbjct 49400 GTCGTGTAGTCATTGAAGCAGCAATTTCCGCAGCTAAGTTATCTAGTTCAATAGTTGTTA 49341 Query 66934 CTCCATTATATATTCCTTGGATAACCTT 66961 ||||| ||||||||| | ||||| || Sbjct 49340 CTCCAGCATATATTCCATTAATAACTTT 49313 Score = 93.3 bits (102), Expect = 6e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64863 GGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGC 64922 || || | ||||| |||||||||||| ||||| ||||| ||||||| ||||| ||| Sbjct 52145 GGCTTTGAACGTAAATAGTACATTCCAGTTTTGAGACCTTTCTTCCATCCATAAAAGTGC 52086 Query 64923 ATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGA 64982 | ||| || || | | | || ||||| ||| ||||| | ||| ||||||||| Sbjct 52085 AAACTTGTCAGACGACCAAAGTTTGGCTCTGCCATAAATATATTGAGAGACTGACTTTGA 52026 Query 64983 TCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA-ATTTCCCA 65041 || || ||||| || | || || ||||| | | | | ||| |||| |||||||| Sbjct 52025 TCAATAAAGGCACCTCGATCAGCTGCCATGTCAACCA-AGGATTTCATGGACATTTCCCA 51967 Query 65042 AATAGTTTTATAAACTCGCTTAATATCTTCTGG 65074 |||||||||| || ||| | || |||||| Sbjct 51966 TGCTGTTTTATAAAGTCTCTTTAAATGTTCTGG 51934 >seq1531 Length=18023 Score = 143 bits (158), Expect = 4e-29 Identities = 153/197 (78%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478 ||||||| |||||| ||||| || | ||||||||||| |||||||| |||||||| || Sbjct 8606 TCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCA 8665 Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGTACTTC-TGTACAAAATCGTT 36536 ||||||||||| || || |||||||||| || || |||||||| | | ||||| | || Sbjct 8666 ATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCAT-TGTACTTCATTTGCAAAA-CATT 8723 Query 36537 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 36596 | | | |||||||| || || || ||||| || ||||| || ||||||| ||| || Sbjct 8724 CAACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATA 8783 Query 36597 TAAAATATTTTTCGTTT 36613 |||||| | | || ||| Sbjct 8784 TAAAATGTCTCTCATTT 8800 Score = 86.0 bits (94), Expect = 8e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 35870 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCC 35929 || ||||| || || |||||||| ||||| |||||||||||||||| ||||||||| Sbjct 7891 TGATATTCCCCAACTCGTTTTTCAAAAAAGTTAGTTTTACCTTCTAGGCTGATATTTTCC 7950 Query 35930 ATGAAATCGAATGGATT 35946 || |||||||||||||| Sbjct 7951 ATAAAATCGAATGGATT 7967 >seq1530 Length=18023 Score = 143 bits (158), Expect = 4e-29 Identities = 153/197 (78%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478 ||||||| |||||| ||||| || | ||||||||||| |||||||| |||||||| || Sbjct 8606 TCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCA 8665 Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGTACTTC-TGTACAAAATCGTT 36536 ||||||||||| || || |||||||||| || || |||||||| | | ||||| | || Sbjct 8666 ATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCAT-TGTACTTCATTTGCAAAA-CATT 8723 Query 36537 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 36596 | | | |||||||| || || || ||||| || ||||| || ||||||| ||| || Sbjct 8724 CAACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATA 8783 Query 36597 TAAAATATTTTTCGTTT 36613 |||||| | | || ||| Sbjct 8784 TAAAATGTCTCTCATTT 8800 Score = 86.0 bits (94), Expect = 8e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 35870 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCC 35929 || ||||| || || |||||||| ||||| |||||||||||||||| ||||||||| Sbjct 7891 TGATATTCCCCAACTCGTTTTTCAAAAAAGTTAGTTTTACCTTCTAGGCTGATATTTTCC 7950 Query 35930 ATGAAATCGAATGGATT 35946 || |||||||||||||| Sbjct 7951 ATAAAATCGAATGGATT 7967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658159332139080