Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq62 466 3e-126 seq1531 132 7e-26 seq1530 132 7e-26 >seq62 Length=56742 Score = 466 bits (516), Expect = 3e-126 Identities = 1016/1509 (67%), Gaps = 39/1509 (3%) Strand=Plus/Minus Query 79054 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGT 79113 || |||||||||||||| || || || || | | || |||||||| || ||| | ||| Sbjct 51783 TTTACTACTTGAAATTCACCTGATAAAACACGTCTAGAATAAATATTGCTCGTAAAAGGT 51724 Query 79114 TCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACC 79173 || | | ||||||||| || | |||||| | ||| ||||| || |||||||||| | | Sbjct 51723 TCAAAAGCTTCATTATTGCCGAGAATTTGTGAAGTAGATGCTGTAGGCATAGGTGAAATC 51664 Query 79174 AATAAACTATTTCTAAGACCGTATGATCTGATTT-TATCTT---TTAGAGATTCCCAATC 79229 || | |||||||||| ||| || || ||| |||||| | | | | |||||| Sbjct 51663 AAAAGGCTATTTCTAACACCATA----CTTTTTTATATCTTGCTTCAACGTGTTCCAATC 51608 Query 79230 CCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACT-AGCGT 79288 ||||||||||| || |||||||| | |||||| || ||||| || | || | | Sbjct 51607 CCAAAGATCAGTAGGCGTTACATTCCACATATCATACTGAAGAATTCCCTGGCTGATAGG 51548 Query 79289 ATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTA 79348 | | ||| |||||||||||| || || | | || ||||||||||| || || | Sbjct 51547 ACTA-CCTTCGTATGTTTCATATGGACCATATTCTTTAGCTAATTCACATGATGCTTCAA 51489 Query 79349 ATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTAT 79408 || || | |||||| ||||| || || | |||| | | || |||||| || | Sbjct 51488 GCGCACCATGATAAATTGTTTCAAATATTTGTATATTTAATTTTTTAGCTTCTTCACTGT 51429 Query 79409 CAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAG 79468 |||| || |||| | | ||| || || ||||||||||| ||||||| || || | Sbjct 51428 CAAAAGGCATCCTTAATAATACAAATGCATCAGCTAATCCTTGTACACCAACTCCAATTG 51369 Query 79469 GTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAA 79528 | ||||| | | | || ||| | | ||||| ||||||||| | || |||| |||| Sbjct 51368 GCCTATGACGCATGTTTGAATTATAGGCTTCAATAATAGGATAGAAGTTTCTATCAATAA 51309 Query 79529 TTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATC 79588 ||| || | ||| | || ||||| || | ||||| ||||| |||| Sbjct 51308 CTTTGTTTAAATTACGAACAGCAACTTTTGTAACGGTATGAAGTTTATCAAAATGAAATA 51249 Query 79589 --------------GTCC---ATCTATTACAAACA--TGTTCAACGCGACA--GATGCCA 79627 || | || || | ||||| | || || | || | ||||| | Sbjct 51248 CATTAGTTGAATCGGTACTAGATTTAGGATAAACAAATTTTGAAAGAGATAACGATGCTA 51189 Query 79628 GATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTT 79685 ||| || || || ||||| | || | |||| |||||||| ||||| || || Sbjct 51188 AATTGCACACAGCAGTCTCATCCTTTGATGAG--TATTCAATTATTTCTGTGCACAGATT 51131 Query 79686 ACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 79745 ||| ||||||| || | ||||| |||||| || || | ||||| ||||| || || Sbjct 51130 GCTAGACTTAATAACACCAAGATTTTTTTGATTGCTTTTACTATTACAAGCATCTTTGTA 51071 Query 79746 AAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 79805 ||| || | || |||||||||||| |||| ||||| || ||| | | | Sbjct 51070 AAGCATATAAGGTTGACCAGTTTCAATTTGAGCTTCTAGTATGAAAAACCATAGTTTTTG 51011 Query 79806 AGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAA 79865 ||| | ||| | ||||||| | |||| |||| || | | | || | | ||| || Sbjct 51010 AGCTTCAATTTGACGTTTGTATCGCCCTTCTTTTTCATACTTTATGTACAGTTCTTCAAA 50951 Query 79866 CTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTC 79925 || || || || ||| | |||||| ||||| | ||| ||||| | ||||| Sbjct 50950 CTTTTCACCGTAACAATCCGAAAGTCCAGGGCATTCATGAGGGCACATAAGTGACCAGAT 50891 Query 79926 TCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGAT 79984 ||||| | | ||||||||||||||| | ||| || ||||| | || ||| || |||| Sbjct 50890 TCCATTACTTTCTACTCGTTTCATAAACAAATCTGGTATCCATAAGGC-ATAGAAAAGAT 50832 Query 79985 CTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 80044 | || | | | ||||| | || ||||| ||| |||||| | || | | |||| Sbjct 50831 CCCTAGCACGAATATCCTCACTACCAGTATTTTTTCGAAGATCTAAAAATTCTACTATAT 50772 Query 80045 CAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGAT 80104 | | |||||| || || || |||||||| | || || || |||||||| || || | Sbjct 50771 CGGCATGCCATGGCTCTAAATATATGGCAAATGAGCCTGGACGCTTGTTTCCACCTTGGT 50712 Query 80105 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTAC 80164 | | ||| | || || || ||||||| || | ||||| ||| ||||| || ||| Sbjct 50711 CAACGTAACGAGAACAATTGTTGTAAACTCGTAAAAGTGGAACAATTCCATTAGAATTAC 50652 Query 80165 CATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTC 80224 |||| || || | ||||| | |||| || ||||||||| ||| ||| || | || Sbjct 50651 CATTCGTTCCTGCAATATATGTACCACAAGCTCGAATATTATGAATATGTAGTCCCACTC 50592 Query 80225 CCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGC 80284 | || || | ||| ||||| | || || ||| | |||||| | || || ||||||| Sbjct 50591 CACCGGCAAATTTGGAGATCATAGCACAGTTTTTAAGTGTATCAAATATACCTTCTATGC 50532 Query 80285 TATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCAT 80344 |||| || |||| | | |||||| ||||||||||| ||||| ||||| |||| Sbjct 50531 TATCGTCTTTCATTGCCAACAAAAAACAACTAGACATTTGAGGACGAGGTGTTCCAGCAT 50472 Query 80345 TAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAG-TAGATTGTACGTCTCA 80403 | |||||||| |||| || || |||||||| ||| |||| ||| || || || || Sbjct 50471 TGAATAAGGTTGGAGTTGCATGAGTAAACCAACGTTCTGACATATAG-TTATATGTTTCT 50413 Query 80404 ATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGA 80463 || || ||||| ||||| ||| || || || || || | ||| ||||| || ||| Sbjct 50412 ATTGCAGATTCAATATCATCAAAATGTATACCAACAGCAACTCTCATCAACATATGTTGA 50353 Query 80464 GGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAA 80523 |||||||| || || || || ||| |||| | |||||| |||| | ||||||||| Sbjct 50352 GGTCTTTCCACAATTTTTCCATCTATCTTCATTAGATAAGATCTTTCAAGGGTTTTAAAA 50293 Query 80524 CCAAAATAG 80532 ||||||||| Sbjct 50292 CCAAAATAG 50284 Score = 105 bits (116), Expect = 1e-17 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 80693 TTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGAT 80752 ||||||| ||||| ||||| ||||| | ||||| || |||||||| ||||||||||||| Sbjct 49460 TTGTTTCTTTGTGGAGATTAGATACAACAATTCTAGCAGCTAAAATAGCATAATCTGGAT 49401 Query 80753 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 80812 || ||||||| | || || ||||| || || | | || | ||| | ||||||| Sbjct 49400 GTCGTGTAGTCATTGAAGCAGCAATTTCCGCAGCTAAGTTATCTAGTTCAATAGTTGTTA 49341 Query 80813 CTCCATTATATATTCCTTGGATAACCTT 80840 ||||| ||||||||| | ||||| || Sbjct 49340 CTCCAGCATATATTCCATTAATAACTTT 49313 Score = 89.7 bits (98), Expect = 7e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 78742 GGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGC 78801 || || | ||||| |||||||||||| ||||| ||||| ||||||| || || ||| Sbjct 52145 GGCTTTGAACGTAAATAGTACATTCCAGTTTTGAGACCTTTCTTCCATCCATAAAAGTGC 52086 Query 78802 ATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGA 78861 | ||| || || | | | || ||||| ||| ||||| | ||| ||||||||| Sbjct 52085 AAACTTGTCAGACGACCAAAGTTTGGCTCTGCCATAAATATATTGAGAGACTGACTTTGA 52026 Query 78862 TCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA-ATTTCCCA 78920 || || ||||| || | || || ||||| | | | | ||| |||| |||||||| Sbjct 52025 TCAATAAAGGCACCTCGATCAGCTGCCATGTCAACCA-AGGATTTCATGGACATTTCCCA 51967 Query 78921 AATAGTTTTATAAACTCGCTTAATATCTTCTGG 78953 |||||||||| || ||| | || |||||| Sbjct 51966 TGCTGTTTTATAAAGTCTCTTTAAATGTTCTGG 51934 >seq1531 Length=18023 Score = 132 bits (146), Expect = 7e-26 Identities = 150/196 (77%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280 ||||||| ||| || || || || | ||||||||||| |||||||| |||||||| || Sbjct 8606 TCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCA 8665 Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGCACTTC-TGTACAAAATCGTT 50338 || |||||||| || || |||||||||| || || || ||||| | | ||||| | || Sbjct 8666 ATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCAT-TGTACTTCATTTGCAAAA-CATT 8723 Query 50339 CAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 50398 || | | |||||||| || || || ||||| || ||||| || ||||||| ||| || Sbjct 8724 CAACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATA 8783 Query 50399 TAAAATGTTTTTCGTT 50414 |||||||| | || || Sbjct 8784 TAAAATGTCTCTCATT 8799 >seq1530 Length=18023 Score = 132 bits (146), Expect = 7e-26 Identities = 150/196 (77%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280 ||||||| ||| || || || || | ||||||||||| |||||||| |||||||| || Sbjct 8606 TCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCA 8665 Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGCACTTC-TGTACAAAATCGTT 50338 || |||||||| || || |||||||||| || || || ||||| | | ||||| | || Sbjct 8666 ATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCAT-TGTACTTCATTTGCAAAA-CATT 8723 Query 50339 CAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 50398 || | | |||||||| || || || ||||| || ||||| || ||||||| ||| || Sbjct 8724 CAACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATA 8783 Query 50399 TAAAATGTTTTTCGTT 50414 |||||||| | || || Sbjct 8784 TAAAATGTCTCTCATT 8799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718254102424680