Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1531 163 3e-35 seq1530 163 3e-35 >seq1531 Length=18023 Score = 163 bits (180), Expect = 3e-35 Identities = 163/206 (79%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 14102 AATAGCATTAAATAAATAT-TCCTTCTCTT-TAGTACTTGAAATGTATGTATCAATAAGT 14159 || ||| ||||| || | | ||||| ||| | || ||| || | ||||| ||||| | | Sbjct 8572 AAGAGCTTTAAA-AAGTGTGTCCTTTTCTGCTGGTTCTTTAA-TATATGTTTCAATTAAT 8629 Query 14160 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTA 14219 ||||||||||||||||| || || ||||| ||||| || ||||| ||||||||| ||||| Sbjct 8630 AAGCTATACATTTCAGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAGAATCTA 8689 Query 14220 GCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14279 || || | |||||||||||| ||| | ||| ||| ||||||||||| |||||| Sbjct 8690 GCCTCAGGCCATTGTACTTCATTTGCAAAACATTCAACCAGGTTTTCATTAACAATACCA 8749 Query 14280 TCACTAGCTGCAAAAAATGCCAATAT 14305 |||||||| ||||| ||||||||||| Sbjct 8750 TCACTAGCAGCAAAGAATGCCAATAT 8775 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 |||||||| | ||||| ||||||||| ||||||||||||||||| || ||||||||| Sbjct 7891 TGATATTCCCCAACTCGTTTTTCAAAAAAGTTAGTTTTACCTTCTAGGCTGATATTTTCC 7950 Query 13644 ATAAAATCAAATGGATT 13660 |||||||| |||||||| Sbjct 7951 ATAAAATCGAATGGATT 7967 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/223 (70%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 13706 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13765 |||||| | ||| || ||||| | | |||| | |||||||||| || || || || || Sbjct 8065 ATCAGCTACAAATTCTATATACTTACACATATCAGCACAATTCATTCCAATAAGATTCAC 8124 Query 13766 AGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGT 13825 ||| | | | |||||||||||||| ||| || || || | ||||| |||| Sbjct 8125 AGGTAAAGCTTCACTGAAAAATTCTTTTTCAATATCAACTGCTTCAGTGATAAT--TTGT 8182 Query 13826 ---AATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13882 | ||| ||| || || ||||||| | ||||| ||||| || |||||||| Sbjct 8183 TTGACTAAA-TCAAATGATGGTTTGTATTTTATGTAGTTAAACATTAAGCAAGCAAAATC 8241 Query 13883 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAA 13923 | ||||| || ||||||||||| |||||||| || ||||| Sbjct 8242 AGTGTGAAGTCCTTCATCTCTACTGATAAGTTCATTACTGAAA 8284 >seq1530 Length=18023 Score = 163 bits (180), Expect = 3e-35 Identities = 163/206 (79%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 14102 AATAGCATTAAATAAATAT-TCCTTCTCTT-TAGTACTTGAAATGTATGTATCAATAAGT 14159 || ||| ||||| || | | ||||| ||| | || ||| || | ||||| ||||| | | Sbjct 8572 AAGAGCTTTAAA-AAGTGTGTCCTTTTCTGCTGGTTCTTTAA-TATATGTTTCAATTAAT 8629 Query 14160 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTA 14219 ||||||||||||||||| || || ||||| ||||| || ||||| ||||||||| ||||| Sbjct 8630 AAGCTATACATTTCAGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAGAATCTA 8689 Query 14220 GCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14279 || || | |||||||||||| ||| | ||| ||| ||||||||||| |||||| Sbjct 8690 GCCTCAGGCCATTGTACTTCATTTGCAAAACATTCAACCAGGTTTTCATTAACAATACCA 8749 Query 14280 TCACTAGCTGCAAAAAATGCCAATAT 14305 |||||||| ||||| ||||||||||| Sbjct 8750 TCACTAGCAGCAAAGAATGCCAATAT 8775 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 |||||||| | ||||| ||||||||| ||||||||||||||||| || ||||||||| Sbjct 7891 TGATATTCCCCAACTCGTTTTTCAAAAAAGTTAGTTTTACCTTCTAGGCTGATATTTTCC 7950 Query 13644 ATAAAATCAAATGGATT 13660 |||||||| |||||||| Sbjct 7951 ATAAAATCGAATGGATT 7967 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/223 (70%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 13706 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13765 |||||| | ||| || ||||| | | |||| | |||||||||| || || || || || Sbjct 8065 ATCAGCTACAAATTCTATATACTTACACATATCAGCACAATTCATTCCAATAAGATTCAC 8124 Query 13766 AGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGT 13825 ||| | | | |||||||||||||| ||| || || || | ||||| |||| Sbjct 8125 AGGTAAAGCTTCACTGAAAAATTCTTTTTCAATATCAACTGCTTCAGTGATAAT--TTGT 8182 Query 13826 ---AATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13882 | ||| ||| || || ||||||| | ||||| ||||| || |||||||| Sbjct 8183 TTGACTAAA-TCAAATGATGGTTTGTATTTTATGTAGTTAAACATTAAGCAAGCAAAATC 8241 Query 13883 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAA 13923 | ||||| || ||||||||||| |||||||| || ||||| Sbjct 8242 AGTGTGAAGTCCTTCATCTCTACTGATAAGTTCATTACTGAAA 8284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479718183565800