Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1531 163 3e-35 seq1530 163 3e-35 >seq1531 Length=18023 Score = 163 bits (180), Expect = 3e-35 Identities = 158/199 (79%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 13897 TTGAATAAATGT-TCCTTCTCTT-TAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 13954 || || || ||| ||||| ||| | || ||| || | ||||| ||||| | |||||||| Sbjct 8578 TTTAAAAAGTGTGTCCTTTTCTGCTGGTTCTTTAA-TATATGTTTCAATTAATAAGCTAT 8636 Query 13955 ACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 |||||||||| || || ||||| ||||| || ||||| |||||||| ||||||| || | Sbjct 8637 ACATTTCAGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAGAATCTAGCCTCAG 8696 Query 14015 ACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAG 14074 ||||||||| || ||| | ||| ||| |||||||||||||||||||||||||| Sbjct 8697 GCCATTGTACTTCATTTGCAAAACATTCAACCAGGTTTTCATTAACAATACCATCACTAG 8756 Query 14075 CTGCAAAAAATGCCAATAT 14093 | ||||| ||||||||||| Sbjct 8757 CAGCAAAGAATGCCAATAT 8775 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 |||||||| | ||||| ||||||||||||||||||||||||||| || ||||||||| Sbjct 7891 TGATATTCCCCAACTCGTTTTTCAAAAAAGTTAGTTTTACCTTCTAGGCTGATATTTTCC 7950 Query 13432 ATAAAATCGAATGGATT 13448 ||||||||||||||||| Sbjct 7951 ATAAAATCGAATGGATT 7967 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553 |||||| | ||| || ||||| | | |||| | |||||||||| || || || || || Sbjct 8065 ATCAGCTACAAATTCTATATACTTACACATATCAGCACAATTCATTCCAATAAGATTCAC 8124 Query 13554 AGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTT 13613 ||| | | | | |||||||||||||| ||| || || || | ||||| || Sbjct 8125 AGGTAAAGCTTCACTGAAAAATTCTTTTTCAATATCAACTGCTTCAGTGATAATTTGTTT 8184 Query 13614 AATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACA 13673 | | ||| || || ||||||| | ||||| ||||| || ||||||||| Sbjct 8185 GACTAAATCAAATGATGGTTTGTATTTTATGTAGTTAAACATTAAGCAAGCAAAATCAGT 8244 Query 13674 ATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAA 13711 ||||| || ||||||||||| |||||||| || ||||| Sbjct 8245 GTGAAGTCCTTCATCTCTACTGATAAGTTCATTACTGAAA 8284 >seq1530 Length=18023 Score = 163 bits (180), Expect = 3e-35 Identities = 158/199 (79%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 13897 TTGAATAAATGT-TCCTTCTCTT-TAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 13954 || || || ||| ||||| ||| | || ||| || | ||||| ||||| | |||||||| Sbjct 8578 TTTAAAAAGTGTGTCCTTTTCTGCTGGTTCTTTAA-TATATGTTTCAATTAATAAGCTAT 8636 Query 13955 ACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 |||||||||| || || ||||| ||||| || ||||| |||||||| ||||||| || | Sbjct 8637 ACATTTCAGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAGAATCTAGCCTCAG 8696 Query 14015 ACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAG 14074 ||||||||| || ||| | ||| ||| |||||||||||||||||||||||||| Sbjct 8697 GCCATTGTACTTCATTTGCAAAACATTCAACCAGGTTTTCATTAACAATACCATCACTAG 8756 Query 14075 CTGCAAAAAATGCCAATAT 14093 | ||||| ||||||||||| Sbjct 8757 CAGCAAAGAATGCCAATAT 8775 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 |||||||| | ||||| ||||||||||||||||||||||||||| || ||||||||| Sbjct 7891 TGATATTCCCCAACTCGTTTTTCAAAAAAGTTAGTTTTACCTTCTAGGCTGATATTTTCC 7950 Query 13432 ATAAAATCGAATGGATT 13448 ||||||||||||||||| Sbjct 7951 ATAAAATCGAATGGATT 7967 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553 |||||| | ||| || ||||| | | |||| | |||||||||| || || || || || Sbjct 8065 ATCAGCTACAAATTCTATATACTTACACATATCAGCACAATTCATTCCAATAAGATTCAC 8124 Query 13554 AGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTT 13613 ||| | | | | |||||||||||||| ||| || || || | ||||| || Sbjct 8125 AGGTAAAGCTTCACTGAAAAATTCTTTTTCAATATCAACTGCTTCAGTGATAATTTGTTT 8184 Query 13614 AATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACA 13673 | | ||| || || ||||||| | ||||| ||||| || ||||||||| Sbjct 8185 GACTAAATCAAATGATGGTTTGTATTTTATGTAGTTAAACATTAAGCAAGCAAAATCAGT 8244 Query 13674 ATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAA 13711 ||||| || ||||||||||| |||||||| || ||||| Sbjct 8245 GTGAAGTCCTTCATCTCTACTGATAAGTTCATTACTGAAA 8284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478579006876680