Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq62 360 3e-94 seq1531 123 3e-23 seq1530 123 3e-23 >seq62 Length=56742 Score = 360 bits (398), Expect = 3e-94 Identities = 1013/1552 (65%), Gaps = 37/1552 (2%) Strand=Plus/Minus Query 71137 TTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGT 71196 || |||||||||||||| || || || || | | || |||||||| || ||| | ||| Sbjct 51783 TTTACTACTTGAAATTCACCTGATAAAACACGTCTAGAATAAATATTGCTCGTAAAAGGT 51724 Query 71197 TCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 71256 || | | |||||||| || | |||||| | ||| ||||| || |||||||||| | | Sbjct 51723 TCAAAAGCTTCATTATTGCCGAGAATTTGTGAAGTAGATGCTGTAGGCATAGGTGAAATC 51664 Query 71257 AATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTT---TTAGAGATTCCCAATTC 71313 || || |||||||||| ||||| | || |||||| | | | | ||||| | Sbjct 51663 AAAAGGCTATTTCTAACACCATACTTTT---TTATATCTTGCTTCAACGTGTTCCAATCC 51607 Query 71314 CAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT-AGCGTA 71372 |||||||| | || || || || | || | | | Sbjct 51606 CAAAGATCAGTAGGCGTTACATTCCACATATCATACTGAAGAATTCCCTGGCTGATAGGA 51547 Query 71373 TGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAA 71432 | ||| | ||||| || ||||| || | || || |||| |||||| || || | Sbjct 51546 CTA-CCTTCGTATGTTTCATATGGACCATATTCTTTAGCTAATTCACATGATGCTTCAAG 51488 Query 71433 TGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATC 71492 || |||| |||||| ||||| || || | |||| | | || ||||| || || Sbjct 51487 CGCACCATGATAAATTGTTTCAAATATTTGTATATTTAATTTTTTAGCTTCTTCACTGTC 51428 Query 71493 AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGG 71552 ||| || |||| | | ||| || || ||||||||||| || |||| || || || Sbjct 51427 AAAAGGCATCCTTAATAATACAAATGCATCAGCTAATCCTTGTACACCAACTCCAATTGG 51368 Query 71553 TCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 71612 || || | | | || ||| | | ||||| ||||||||| | || |||| |||| Sbjct 51367 CCTATGACGCATGTTTGAATTATAGGCTTCAATAATAGGATAGAAGTTTCTATCAATAAC 51308 Query 71613 TTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATC- 71671 ||| || | ||| | || ||||| || | ||||| ||||| |||| Sbjct 51307 TTTGTTTAAATTACGAACAGCAACTTTTGTAACGGTATGAAGTTTATCAAAATGAAATAC 51248 Query 71672 --------------TCCCA--TCTATTACAAACACGTTC---AAGGCAACA-GATGCCAG 71711 | | | | || | ||||| || ||| | | ||||| | Sbjct 51247 ATTAGTTGAATCGGTACTAGATTTAGGATAAACAAATTTTGAAAGAGATAACGATGCTAA 51188 Query 71712 ATTACAAACGGCTACCTCATTAGCATCG--GCATATTGTATAATTTCAGTGCAAAGATTA 71769 ||| || || || ||||| | | | | |||| || ||||| ||||| ||||| Sbjct 51187 ATTGCACACAGCAGTCTCATC--CTTTGATGAGTATTCAATTATTTCTGTGCACAGATTG 51130 Query 71770 CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAA 71829 ||| |||| || || | ||||| |||||| || || | ||||| ||||| || ||| Sbjct 51129 CTAGACTTAATAACACCAAGATTTTTTTGATTGCTTTTACTATTACAAGCATCTTTGTAA 51070 Query 71830 AGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGA 71889 || ||| | || |||||||||||| |||| ||||| || ||| | | || Sbjct 51069 AGCATATAAGGTTGACCAGTTTCAATTTGAGCTTCTAGTATGAAAAACCATAGTTTTTGA 51010 Query 71890 GCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAAC 71949 || | ||| | ||||||| | |||| |||| || | | | || | | ||| ||| Sbjct 51009 GCTTCAATTTGACGTTTGTATCGCCCTTCTTTTTCATACTTTATGTACAGTTCTTCAAAC 50950 Query 71950 TCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCT 72009 | || || || || | |||||| ||||||| || ||||| | |||||| | Sbjct 50949 TTTTCACCGTAACAATCCGAAAGTCCAGGGCATTCATGAGGGCACATAAGTGACCAGATT 50890 Query 72010 CCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATC 72068 |||| | | ||||||||||||||| | ||| || ||||| | || ||| || ||||| Sbjct 50889 CCATTACTTTCTACTCGTTTCATAAACAAATCTGGTATCCATAAGGC-ATAGAAAAGATC 50831 Query 72069 TCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 72128 || | | | ||||| | || ||||| ||| |||||| | || | | ||||| Sbjct 50830 CCTAGCACGAATATCCTCACTACCAGTATTTTTTCGAAGATCTAAAAATTCTACTATATC 50771 Query 72129 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATC 72188 | |||||| || || || |||||||| | || || || |||||||| || || || Sbjct 50770 GGCATGCCATGGCTCTAAATATATGGCAAATGAGCCTGGACGCTTGTTTCCACCTTGGTC 50711 Query 72189 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACC 72248 | ||| | || || || ||||||| || | ||||| ||| ||||| || ||| Sbjct 50710 AACGTAACGAGAACAATTGTTGTAAACTCGTAAAAGTGGAACAATTCCATTAGAATTACC 50651 Query 72249 ATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCC 72308 ||| || || | ||||| | |||| || |||||||| ||| ||| || | ||| Sbjct 50650 ATTCGTTCCTGCAATATATGTACCACAAGCTCGAATATTATGAATATGTAGTCCCACTCC 50591 Query 72309 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACT 72368 || || | ||| ||||| | || || ||| | |||||| | || || ||||| || Sbjct 50590 ACCGGCAAATTTGGAGATCATAGCACAGTTTTTAAGTGTATCAAATATACCTTCTATGCT 50531 Query 72369 ATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATT 72428 ||| || |||| | | |||||| ||||||||||| ||||| ||||| ||||| Sbjct 50530 ATCGTCTTTCATTGCCAACAAAAAACAACTAGACATTTGAGGACGAGGTGTTCCAGCATT 50471 Query 72429 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAG-TAGATTGTACGTCTCAA 72487 |||||||| |||| || || |||||||| ||| |||| ||| || || || || | Sbjct 50470 GAATAAGGTTGGAGTTGCATGAGTAAACCAACGTTCTGACATATAG-TTATATGTTTCTA 50412 Query 72488 TAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAG 72547 | || ||||| ||||| |||||| || || || || | ||| |||||||| |||| Sbjct 50411 TTGCAGATTCAATATCATCAAAATGTATACCAACAGCAACTCTCATCAACATATGTTGAG 50352 Query 72548 GTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAAC 72607 ||||||| || || || || ||| |||| | || ||| |||| | |||||||||| Sbjct 50351 GTCTTTCCACAATTTTTCCATCTATCTTCATTAGATAAGATCTTTCAAGGGTTTTAAAAC 50292 Query 72608 CAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTT 72659 |||||||| || | |||||| | |||| ||| | ||||| | ||| Sbjct 50291 CAAAATAGGAATAATCATAGTCTCTATGATAAACTATAGCTGAATTTAATTT 50240 Score = 100 bits (110), Expect = 4e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 72776 TTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGAT 72835 ||||||| ||||| ||||| ||||| | ||||| || |||| ||| ||||||||||||| Sbjct 49460 TTGTTTCTTTGTGGAGATTAGATACAACAATTCTAGCAGCTAAAATAGCATAATCTGGAT 49401 Query 72836 GTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 72895 || ||||||| | || || ||||| || || | | || | ||| | ||||||| Sbjct 49400 GTCGTGTAGTCATTGAAGCAGCAATTTCCGCAGCTAAGTTATCTAGTTCAATAGTTGTTA 49341 Query 72896 CTCCATTATATATTCCTTGGATAACCTT 72923 ||||| ||||||||| | ||||| || Sbjct 49340 CTCCAGCATATATTCCATTAATAACTTT 49313 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/214 (70%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 70824 GGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATG 70883 |||||| | ||||| ||||||||| || ||||| ||||| ||||||| ||||| || Sbjct 52145 GGCTTT-GAACGTAAATAGTACATTCCAGTTTTGAGACCTTTCTTCCATCCATAAAAGTG 52087 Query 70884 CATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTG 70943 || ||| || || | || | || || || || ||||| | ||||||||||| Sbjct 52086 CAAACTTGTCAGACGACCAAAGTTTGGCTCTGCCATAAATATATTGAGAGACTGACTTTG 52027 Query 70944 ATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA-ATTTCCC 71002 ||| || ||||| || | || || ||||| | | | | ||| |||| ||||||| Sbjct 52026 ATCAATAAAGGCACCTCGATCAGCTGCCATGTCAACCA-AGGATTTCATGGACATTTCCC 51968 Query 71003 AAATAGTTTTATAAACTCGCTTAATATCTTCTGG 71036 | |||||||||| || ||| | || |||||| Sbjct 51967 ATGCTGTTTTATAAAGTCTCTTTAAATGTTCTGG 51934 >seq1531 Length=18023 Score = 123 bits (136), Expect = 3e-23 Identities = 140/185 (76%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 ||||||| |||||| || || || | ||||||||||| |||||||| |||||||| || Sbjct 8606 TCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCA 8665 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC-TGTACAAAATCGTTC 42444 || |||||||| || || |||| ||||| | |||||||| | | ||||| | ||| Sbjct 8666 ATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCATTGTACTTCATTTGCAAAA-CATTC 8724 Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504 | | | ||||| || || || || ||||| || ||||| || ||||||| ||| ||| Sbjct 8725 AACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATAT 8784 Query 42505 AAAAT 42509 ||||| Sbjct 8785 AAAAT 8789 >seq1530 Length=18023 Score = 123 bits (136), Expect = 3e-23 Identities = 140/185 (76%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 ||||||| |||||| || || || | ||||||||||| |||||||| |||||||| || Sbjct 8606 TCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCA 8665 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC-TGTACAAAATCGTTC 42444 || |||||||| || || |||| ||||| | |||||||| | | ||||| | ||| Sbjct 8666 ATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCATTGTACTTCATTTGCAAAA-CATTC 8724 Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504 | | | ||||| || || || || ||||| || ||||| || ||||||| ||| ||| Sbjct 8725 AACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATAT 8784 Query 42505 AAAAT 42509 ||||| Sbjct 8785 AAAAT 8789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671125466814120