Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1466 111 1e-19 seq1258 111 1e-19 seq1155 111 1e-19 >seq1466 Length=125466 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||||| || |||||||| || || || ||||| | || ||||| || |||| | Sbjct 71666 TCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAAAGTGTTCTACC 71607 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||| | ||| || |||||| |||||| | ||||| || |||||| |||||||| Sbjct 71606 ATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACCTTCTTT 71547 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 ||| |||||| || || ||| ||||||| ||||| || || || | ||||| Sbjct 71546 GTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAGAGTAAT 71487 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || | ||||||| |||||| ||||| Sbjct 71486 AGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 71451 >seq1258 Length=100613 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||||| || |||||||| || || || ||||| | || ||||| || |||| | Sbjct 40425 TCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAAAGTGTTCTACC 40366 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||| | ||| || |||||| |||||| | ||||| || |||||| |||||||| Sbjct 40365 ATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACCTTCTTT 40306 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 ||| |||||| || || ||| ||||||| ||||| || || || | ||||| Sbjct 40305 GTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAGAGTAAT 40246 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || | ||||||| |||||| ||||| Sbjct 40245 AGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 40210 >seq1155 Length=100669 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||||| || |||||||| || || || ||||| | || ||||| || |||| | Sbjct 60245 TCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAAAGTGTTCTACC 60304 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||| | ||| || |||||| |||||| | ||||| || |||||| |||||||| Sbjct 60305 ATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACCTTCTTT 60364 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 ||| |||||| || || ||| ||||||| ||||| || || || | ||||| Sbjct 60365 GTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAGAGTAAT 60424 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || | ||||||| |||||| ||||| Sbjct 60425 AGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 60460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362171974185417