Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1531 123 2e-23 seq1530 123 2e-23 >seq1531 Length=18023 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 |||||| || || || ||||||||||||||||| |||||||||||||| || || ||||| Sbjct 8611 AATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCAATTTG 8670 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAA 13539 || |||||||| |||||||||| | || ||||| ||| | ||| | | Sbjct 8671 AAATCCATAAAAGAATCTAGCCTCAGGCCATTGTACTTCATTTGCAAAACATTCAACCAG 8730 Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttt 13599 |||||| ||||| || || |||||||||||||| || || | ||| || ||||| | Sbjct 8731 GTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATATAAAATG 8790 Query 13600 tttttCGTTTT 13610 | | || |||| Sbjct 8791 TCTCTCATTTT 8801 Score = 89.7 bits (98), Expect = 4e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 |||||||| | ||||| ||||||||||||||| ||||| ||||||| ||||||||| Sbjct 7891 TGATATTCCCCAACTCGTTTTTCAAAAAAGTTAGTTTTACCTTCTAGGCTGATATTTTCC 7950 Query 12923 ATAAAATCGAAAGGATT 12939 ||||||||||| ||||| Sbjct 7951 ATAAAATCGAATGGATT 7967 >seq1530 Length=18023 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 |||||| || || || ||||||||||||||||| |||||||||||||| || || ||||| Sbjct 8611 AATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCAATTTG 8670 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAA 13539 || |||||||| |||||||||| | || ||||| ||| | ||| | | Sbjct 8671 AAATCCATAAAAGAATCTAGCCTCAGGCCATTGTACTTCATTTGCAAAACATTCAACCAG 8730 Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttt 13599 |||||| ||||| || || |||||||||||||| || || | ||| || ||||| | Sbjct 8731 GTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATATAAAATG 8790 Query 13600 tttttCGTTTT 13610 | | || |||| Sbjct 8791 TCTCTCATTTT 8801 Score = 89.7 bits (98), Expect = 4e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 |||||||| | ||||| ||||||||||||||| ||||| ||||||| ||||||||| Sbjct 7891 TGATATTCCCCAACTCGTTTTTCAAAAAAGTTAGTTTTACCTTCTAGGCTGATATTTTCC 7950 Query 12923 ATAAAATCGAAAGGATT 12939 ||||||||||| ||||| Sbjct 7951 ATAAAATCGAATGGATT 7967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430973801497074