Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq630 185 2e-41 seq1466 176 1e-38 seq1258 176 1e-38 seq1155 176 1e-38 seq1253 154 3e-32 seq1531 125 2e-23 seq1530 125 2e-23 >seq630 Length=36350 Score = 185 bits (204), Expect = 2e-41 Identities = 176/225 (78%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 104336 CCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGA 104395 ||||||| | ||| || ||||| | || ||||| || |||| ||| ||||| || || Sbjct 1 CCTCTTAATCGAAGAACAAGATGGAGGGTGGATTCCTTTTGAACATTGTAGTCCGAAAGG 60 Query 104396 GTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATT 104455 ||||| || ||||| | |||||||||||||||||| | || |||||||| |||||||| Sbjct 61 GTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCTGGAGGTATA 120 Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| || || || ||||| | |||||||||||| | || || ||| || || || Sbjct 121 CCTTCCTTGTCTTGGATCTTAGATTTTACATTTTCAATAGTGTCAGAAGGATCCACTTCA 180 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||||||||| || ||||| |||||||| | ||| ||||||||| Sbjct 181 AGTGTAATAGTTTTTCCAGTTAGTGTTTTAATAAAAATCTGCATT 225 >seq1466 Length=125466 Score = 176 bits (194), Expect = 1e-38 Identities = 172/219 (79%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 || || ||||| | ||| | ||| ||||| || |||| |||||| || || || |||||| Sbjct 71668 AGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAAAGTGTTCTA 71609 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| ||||| |||||||| || || || ||||||||||| || || || |||||| Sbjct 71608 CCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACCTTCT 71549 Query 104462 TTATCCTGAATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGT 104520 || || ||||| ||| ||||| |||||||||| ||||| || || || || || || Sbjct 71548 TTGTCTTGAAT-TTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAGAGT 71490 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || ||||| | |||||||| ||| |||||||| Sbjct 71489 AATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 71451 >seq1258 Length=100613 Score = 176 bits (194), Expect = 1e-38 Identities = 172/219 (79%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 || || ||||| | ||| | ||| ||||| || |||| |||||| || || || |||||| Sbjct 40427 AGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAAAGTGTTCTA 40368 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| ||||| |||||||| || || || ||||||||||| || || || |||||| Sbjct 40367 CCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACCTTCT 40308 Query 104462 TTATCCTGAATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGT 104520 || || ||||| ||| ||||| |||||||||| ||||| || || || || || || Sbjct 40307 TTGTCTTGAAT-TTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAGAGT 40249 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || ||||| | |||||||| ||| |||||||| Sbjct 40248 AATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 40210 >seq1155 Length=100669 Score = 176 bits (194), Expect = 1e-38 Identities = 172/219 (79%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 || || ||||| | ||| | ||| ||||| || |||| |||||| || || || |||||| Sbjct 60243 AGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAAAGTGTTCTA 60302 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| ||||| |||||||| || || || ||||||||||| || || || |||||| Sbjct 60303 CCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACCTTCT 60362 Query 104462 TTATCCTGAATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGT 104520 || || ||||| ||| ||||| |||||||||| ||||| || || || || || || Sbjct 60363 TTGTCTTGAAT-TTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAGAGT 60421 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || ||||| | |||||||| ||| |||||||| Sbjct 60422 AATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 60460 >seq1253 Length=11614 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| | ||| || ||||| | || ||||| || |||| ||| ||||| || Sbjct 11412 CCACCTCTTAATCGAAGAACAAGATGGAGGGTGGATTCCTTTTGAACATTGTAGTCCGAA 11471 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || ||||| || ||||| | |||||||||||||||||| | || |||||||| |||||| Sbjct 11472 AGGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCTGGAGGT 11531 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || || ||||| | |||||| ||||| | || || ||| || || Sbjct 11532 ATACCTTCCTTGTCTTGGATCTTAGATTTTACGTTTTCAATAGTGTCAGAAGGATCCACT 11591 Query 104513 TCTAGTGTAATAGTCTTACCAGT 104535 || ||||||||||| || ||||| Sbjct 11592 TCAAGTGTAATAGTTTTTCCAGT 11614 >seq1531 Length=18023 Score = 125 bits (138), Expect = 2e-23 Identities = 196/273 (72%), Gaps = 8/273 (3%) Strand=Plus/Minus Query 268841 TTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTA 268900 |||||||| |||| | || || ||||| | |||||||||||| ||||| ||||| || Sbjct 8787 TTTATATCCCATATATTGGCATTCTTTGCTGCTAGTGATGGTATTGTTAATGAAAACCTG 8728 Query 268901 GTAGAGAAGTTCTGTCAA-GAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCA 268959 || || | ||| || || || ||||| ||||| || |||| ||||| ||||| || Sbjct 8727 GTTGA-ATGTTTTGCAAATGAAGTACAATGGCCTGAGGCTAGATTCTTTTATGGATTTCA 8669 Query 268960 GATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGA 269019 || ||||| |||||||||||||| || ||||| || ||||||| || || ||||| | Sbjct 8668 AATTGCTATTGAAAATATTCATTCTGAAATGTATAGCTTATTAATTGAAACATATATTAA 8609 Query 269020 TGATAACAAC-GAAAAGAAAAGACTATTTTCTTCTATGAGAACTATGGAC--TGTGTGAG 269076 || | || | |||||| | | ||| ||| || | ||||| || ||| || Sbjct 8608 AGA-ACCAGCAGAAAAGGACACACTTTTTAAAGCTCT--TCACTATATACCAACTGTAAG 8552 Query 269077 aaaaaaaTCTGAATGGGCTCTGAAATGGATAAA 269109 |||||| | ||||||| || | |||||||| Sbjct 8551 AAAAAAGGCGCAATGGGCACTTGACTGGATAAA 8519 >seq1530 Length=18023 Score = 125 bits (138), Expect = 2e-23 Identities = 196/273 (72%), Gaps = 8/273 (3%) Strand=Plus/Minus Query 268841 TTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTA 268900 |||||||| |||| | || || ||||| | |||||||||||| ||||| ||||| || Sbjct 8787 TTTATATCCCATATATTGGCATTCTTTGCTGCTAGTGATGGTATTGTTAATGAAAACCTG 8728 Query 268901 GTAGAGAAGTTCTGTCAA-GAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCA 268959 || || | ||| || || || ||||| ||||| || |||| ||||| ||||| || Sbjct 8727 GTTGA-ATGTTTTGCAAATGAAGTACAATGGCCTGAGGCTAGATTCTTTTATGGATTTCA 8669 Query 268960 GATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGA 269019 || ||||| |||||||||||||| || ||||| || ||||||| || || ||||| | Sbjct 8668 AATTGCTATTGAAAATATTCATTCTGAAATGTATAGCTTATTAATTGAAACATATATTAA 8609 Query 269020 TGATAACAAC-GAAAAGAAAAGACTATTTTCTTCTATGAGAACTATGGAC--TGTGTGAG 269076 || | || | |||||| | | ||| ||| || | ||||| || ||| || Sbjct 8608 AGA-ACCAGCAGAAAAGGACACACTTTTTAAAGCTCT--TCACTATATACCAACTGTAAG 8552 Query 269077 aaaaaaaTCTGAATGGGCTCTGAAATGGATAAA 269109 |||||| | ||||||| || | |||||||| Sbjct 8551 AAAAAAGGCGCAATGGGCACTTGACTGGATAAA 8519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151374250497996