Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1620 143 3e-29 seq723 143 3e-29 seq62 134 2e-26 seq342 118 1e-21 >seq1620 Length=46792 Score = 143 bits (158), Expect = 3e-29 Identities = 189/257 (74%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 19330 TAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTAC 19389 |||| ||||| | | || || ||| ||| |||| |||||||| ||||| | Sbjct 25138 TAAAGTTAAAGTTCGTTCAGTTAGAATTCCTCAAATTGGTGATAAATTTGCAAGTAGACA 25079 Query 19390 TGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGA 19449 || ||||||||| ||||||||||| | |||||||||||||||||||| |||||| || Sbjct 25078 TGGTCAAAAAGGTACATGTGGTATAACATATCGTCAAGAAGATATGCCGTTTACTGCTGA 25019 Query 19450 TGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGACGCTTAA 19509 ||| ||||| || ||| ||||||| || || |||||| |||||||||| ||||| || Sbjct 25018 TGGAATAGTTCCCGATATTATTATCAATCCTCATGCTATTCCAAGTCGTATGACCATTGG 24959 Query 19510 TTAT-ATATTACAAATGTGTT-ATGG---TTTAGCGGCTTGTAAAACAGGAAAAATTTAT 19564 | || |||| ||||| || | || || | ||| ||| |||| ||||| | Sbjct 24958 TCATCTTATT--GAATGTCTTCAAGGCAAAGTATCAGCTCTTAA---AGGAGAAATTGGT 24904 Query 19565 GATGCTACTCCTTTTAA 19581 |||||||| |||||||| Sbjct 24903 GATGCTACACCTTTTAA 24887 >seq723 Length=46792 Score = 143 bits (158), Expect = 3e-29 Identities = 189/257 (74%), Gaps = 10/257 (4%) Strand=Plus/Plus Query 19330 TAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTAC 19389 |||| ||||| | | || || ||| ||| |||| |||||||| ||||| | Sbjct 21655 TAAAGTTAAAGTTCGTTCAGTTAGAATTCCTCAAATTGGTGATAAATTTGCAAGTAGACA 21714 Query 19390 TGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGA 19449 || ||||||||| ||||||||||| | |||||||||||||||||||| |||||| || Sbjct 21715 TGGTCAAAAAGGTACATGTGGTATAACATATCGTCAAGAAGATATGCCGTTTACTGCTGA 21774 Query 19450 TGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGACGCTTAA 19509 ||| ||||| || ||| ||||||| || || |||||| |||||||||| ||||| || Sbjct 21775 TGGAATAGTTCCCGATATTATTATCAATCCTCATGCTATTCCAAGTCGTATGACCATTGG 21834 Query 19510 TTAT-ATATTACAAATGTGTT-ATGG---TTTAGCGGCTTGTAAAACAGGAAAAATTTAT 19564 | || |||| ||||| || | || || | ||| ||| |||| ||||| | Sbjct 21835 TCATCTTATT--GAATGTCTTCAAGGCAAAGTATCAGCTCTTAA---AGGAGAAATTGGT 21889 Query 19565 GATGCTACTCCTTTTAA 19581 |||||||| |||||||| Sbjct 21890 GATGCTACACCTTTTAA 21906 >seq62 Length=56742 Score = 134 bits (148), Expect = 2e-26 Identities = 164/216 (76%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 7063 GGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTA-T 7121 ||||||||||| | ||||| || ||||| || |||| ||||| ||| ||| | Sbjct 53702 GGATTCCAAGCTGACATTATTATCCGTCTGCTATAGGGATCA-TTTTTGATTAAATTAAT 53760 Query 7122 AATTATTTGTAA-TTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAAT 7180 || | | | || |||||||| |||||| || |||||||| ||||| || | ||| | Sbjct 53761 AACT-TCAGCAAGTTGATCTACACCCTGGCCATCATAATTGGTATGCATATCGACATATT 53819 Query 7181 TAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGAT 7240 |||||||||||| ||||||||||| ||||| | |||||| | ||| ||||||||||||| Sbjct 53820 GAGCTCCAAAATGCCTCCATTGAAAGCCATAGACAGGACCAAGATCCCCTTCTTCACGAT 53879 Query 7241 GATTAAATCCTAATCG-ATTTAAATTAGATTTTGAT 7275 ||| || ||| ||| | || ||||| || | ||||| Sbjct 53880 GATGAAGTCC-AATAGAATCTAAATAAGCTCTTGAT 53914 >seq342 Length=37847 Score = 118 bits (130), Expect = 1e-21 Identities = 181/255 (71%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 164446 ATTTTCAGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGC 164505 || || |||||||||||| |||| || | ||||| |||||| | || | |||| Sbjct 29288 ATATTTAGACGAGCATTTTCTTCGCGAATATTTCCTCCAGAAATAGTTGAAGAGCTAGGA 29229 Query 164506 TGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATG 164565 | || ||| ||| ||| || ||| | |||| || || || || |||||| | | Sbjct 29228 TTGAAGCATGTAAGAGGTATATTACTTTATGGCCCACCAGGAACAGGAAAAACACTCTTA 29169 Query 164566 GCTCGATGCATTGCTCAAGCTTTTAAATCGC---GACCCGTTAAAATTGTTAATGGTCCT 164622 ||||| |||| | || | |||||| | || || ||||||| ||||||| ||| Sbjct 29168 GCTCGTCAAATTGGTAAAA-TGTTAAATAGTAGAGAACC--TAAAATTATTAATGGACCT 29112 Query 164623 GAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAG 164682 ||| | | || |||| ||| || || || ||||||||| ||||||| |||||| | || Sbjct 29111 GAAATTCTTAATAAATTTGTTGGAGAATCCGAAGCTAATATTAGAAAATTGTTTGAAGAT 29052 Query 164683 GCTGAAGAAGAACAA 164697 ||||||||||||||| Sbjct 29051 GCTGAAGAAGAACAA 29037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595859806969200