Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1466 118 1e-21 seq1258 118 1e-21 seq1155 118 1e-21 seq630 111 1e-19 seq1253 95.1 1e-14 >seq1466 Length=125466 Score = 118 bits (130), Expect = 1e-21 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 ||||| || | || ||||||||||| || |||||||| | | |||||| | ||| | Sbjct 71659 ACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATC--TGAAAGTGTTCTACCATCTT 71602 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | || || ||||| | || || | ||| || |||||||| ||||||||||||||||| | Sbjct 71601 CAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACCTTCTTTGTCTT 71542 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||| ||||| | | ||| |||| |||| || |||| || || |||| Sbjct 71541 GAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAGAGTAATAGTTT 71482 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| | ||||| | ||| |||||||| Sbjct 71481 TTCCAGTTAATGTTTTTATAAAAATCTGCAT 71451 >seq1258 Length=100613 Score = 118 bits (130), Expect = 1e-21 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 ||||| || | || ||||||||||| || |||||||| | | |||||| | ||| | Sbjct 40418 ACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATC--TGAAAGTGTTCTACCATCTT 40361 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | || || ||||| | || || | ||| || |||||||| ||||||||||||||||| | Sbjct 40360 CAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACCTTCTTTGTCTT 40301 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||| ||||| | | ||| |||| |||| || |||| || || |||| Sbjct 40300 GAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAGAGTAATAGTTT 40241 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| | ||||| | ||| |||||||| Sbjct 40240 TTCCAGTTAATGTTTTTATAAAAATCTGCAT 40210 >seq1155 Length=100669 Score = 118 bits (130), Expect = 1e-21 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 ||||| || | || ||||||||||| || |||||||| | | |||||| | ||| | Sbjct 60252 ACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATC--TGAAAGTGTTCTACCATCTT 60309 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | || || ||||| | || || | ||| || |||||||| ||||||||||||||||| | Sbjct 60310 CAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGAATACCTTCTTTGTCTT 60369 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||| ||||| | | ||| |||| |||| || |||| || || |||| Sbjct 60370 GAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACTTCAAGAGTAATAGTTT 60429 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| | ||||| | ||| |||||||| Sbjct 60430 TTCCAGTTAATGTTTTTATAAAAATCTGCAT 60460 >seq630 Length=36350 Score = 111 bits (122), Expect = 1e-19 Identities = 161/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 94784 CCTCTCAATCGCAACACCAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCAT 94842 ||||| ||||| || | |||| || | || ||||||||||| || || || || | Sbjct 1 CCTCTTAATCG-AAGAACAAGATGGAGGGTGGATTCCTTTTGAACATTGTAGTCCGAAAG 59 Query 94843 AGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAAT 94902 || | ||| |||| |||||||| |||| || |||||||| ||||||||||| || Sbjct 60 GGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCTGGAGGTAT 119 Query 94903 ACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTC 94962 |||||| ||||| | || || | || || | | |||||||| | || || || Sbjct 120 ACCTTCCTTGTCTTGGATCTTAGATTTTACATTTTCAATAGTGTCAGAAGGATCCACTTC 179 Query 94963 AATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||||||||| || ||||| | ||| |||||||| Sbjct 180 AAGTGTAATAGTTTTTCCAGTTAGTGTTTTAATAAAAATCTGCAT 224 >seq1253 Length=11614 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 || ||||| ||||| || | |||| || | || ||||||||||| || || || || Sbjct 11412 CCACCTCTTAATCG-AAGAACAAGATGGAGGGTGGATTCCTTTTGAACATTGTAGTCCGA 11470 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 | || | ||| |||| |||||||| |||| || |||||||| ||||||||||| Sbjct 11471 AAGGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCTGGAGG 11530 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 |||||||| ||||| | || || | || ||| | | |||||||| | || || Sbjct 11531 TATACCTTCCTTGTCTTGGATCTTAGATTTTACGTTTTCAATAGTGTCAGAAGGATCCAC 11590 Query 94960 GTCAATCGTGATGGTTTTTCCAGT 94983 |||| || || ||||||||||| Sbjct 11591 TTCAAGTGTAATAGTTTTTCCAGT 11614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448282026841320