Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq62 385 6e-102 seq1531 132 6e-26 seq1530 132 6e-26 >seq62 Length=56742 Score = 385 bits (426), Expect = 6e-102 Identities = 1034/1569 (66%), Gaps = 43/1569 (3%) Strand=Plus/Minus Query 62273 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 62332 ||| || || ||||||||||| | ||| | ||| | || || | || | || Sbjct 51841 ATTTTTTATATCATCATTCCAAATATTTAAATTAACCAAATCGCTTAGTAAATACTTGTT 51782 Query 62333 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 62392 |||||||||||||| || || || || | | || |||||||| || ||| | ||||| Sbjct 51781 TACTACTTGAAATTCACCTGATAAAACACGTCTAGAATAAATATTGCTCGTAAAAGGTTC 51722 Query 62393 CACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 62452 | | |||||||| || | |||||| | ||| ||||| || |||||||||| | ||| Sbjct 51721 AAAAGCTTCATTATTGCCGAGAATTTGTGAAGTAGATGCTGTAGGCATAGGTGAAATCAA 51662 Query 62453 TAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT--TTAGAGGT-TCCCAATTCCA 62509 | |||||||||| ||| || || | || ||||| || | || | ||||| ||| Sbjct 51661 AAGGCTATTTCTAACACCATACTTTTTTAT---ATCTTGCTTCAACGTGTTCCAATCCCA 51605 Query 62510 AAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACG 62568 |||||| | || || || ||||| || | ||| | || Sbjct 51604 AAGATCAGTAGGCGTTACATTCCACATATCATACTGAAGAATTCCCTGGCTGATAGGACT 51545 Query 62569 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 62628 | ||| | ||||| || ||||| || | | | ||||| |||||| || || | | Sbjct 51544 A-CCTTCGTATGTTTCATATGGACCATATTCTTTAGCTAATTCACATGATGCTTCAAGCG 51486 Query 62629 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 62688 |||| | |||||| ||||| || || | |||||| | || ||||| || |||| Sbjct 51485 CACCATGATAAATTGTTTCAAATATTTGTATATTTAATTTTTTAGCTTCTTCACTGTCAA 51426 Query 62689 ATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTC 62748 | || |||| | | ||| || || ||||||||||| ||||||| || || || | Sbjct 51425 AAGGCATCCTTAATAATACAAATGCATCAGCTAATCCTTGTACACCAACTCCAATTGGCC 51366 Query 62749 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 62808 |||| | | | || || | | ||||| ||||||||| | || |||| |||| || Sbjct 51365 TATGACGCATGTTTGAATTATAGGCTTCAATAATAGGATAGAAGTTTCTATCAATAACTT 51306 Query 62809 TATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC--- 62865 | || | ||| | ||| ||||| || | ||||| ||||| |||| Sbjct 51305 TGTTTAAATTACGAACAGCAACTTTTGTAACGGTATGAAGTTTATCAAAATGAAATACAT 51246 Query 62866 -----------GCCC---ATCTATTACAAACA--TGTTCAAGGCAACA--GATGCCAGAT 62907 | | || || | ||||| | || || | | | ||||| | || Sbjct 51245 TAGTTGAATCGGTACTAGATTTAGGATAAACAAATTTTGAAAGAGATAACGATGCTAAAT 51186 Query 62908 TACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACT 62965 | || || || ||||| | || | |||| ||||| || ||||| ||||| || Sbjct 51185 TGCACACAGCAGTCTCATCCTTTGATGAG--TATTCAATTATTTCTGTGCACAGATTGCT 51128 Query 62966 ACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 63025 | |||| ||| || | ||||| |||||| || || | ||||| ||||| || ||||| Sbjct 51127 AGACTTAATAACACCAAGATTTTTTTGATTGCTTTTACTATTACAAGCATCTTTGTAAAG 51068 Query 63026 AATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC 63085 || | || |||||||||||| |||| ||||| || ||| | | |||| Sbjct 51067 CATATAAGGTTGACCAGTTTCAATTTGAGCTTCTAGTATGAAAAACCATAGTTTTTGAGC 51008 Query 63086 CTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTC 63145 | ||| | |||||||| || |||| |||| || | | |||| | ||| |||| Sbjct 51007 TTCAATTTGACGTTTGTATCGCCCTTCTTTTTCATACTTTATGTACAGTTCTTCAAACTT 50948 Query 63146 GTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCC 63205 || || || || | |||||| ||||||| || ||||| | ||||| ||| Sbjct 50947 TTCACCGTAACAATCCGAAAGTCCAGGGCATTCATGAGGGCACATAAGTGACCAGATTCC 50888 Query 63206 GTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCT 63263 | | | ||| |||||||||||||| | ||| || ||||| | || ||| || ||||| Sbjct 50887 ATTA-CTTTCTACTCGTTTCATAAACAAATCTGGTATCCATAAGGC-ATAGAAAAGATCC 50830 Query 63264 CTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCA 63323 || | | | ||||| | || ||||| ||| |||||| | || | | ||||| Sbjct 50829 CTAGCACGAATATCCTCACTACCAGTATTTTTTCGAAGATCTAAAAATTCTACTATATCG 50770 Query 63324 GAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCT 63383 | |||||| || || || |||||||| | || || || |||||||| || || || Sbjct 50769 GCATGCCATGGCTCTAAATATATGGCAAATGAGCCTGGACGCTTGTTTCCACCTTGGTCA 50710 Query 63384 ATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCA 63443 | ||| | || || || ||||||| || | ||||| ||| || || || ||||| Sbjct 50709 ACGTAACGAGAACAATTGTTGTAAACTCGTAAAAGTGGAACAATTCCATTAGAATTACCA 50650 Query 63444 TTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCC 63503 || || || | ||||| | |||| || ||||||||| ||| ||| || | ||| Sbjct 50649 TTCGTTCCTGCAATATATGTACCACAAGCTCGAATATTATGAATATGTAGTCCCACTCCA 50590 Query 63504 CCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGT--CATAGATACCCTCTATGC 63561 || || | ||| ||||| | || || ||||| | |||| || | ||||| ||||||| Sbjct 50589 CCGGCAAATTTGGAGATCATAGCACA--GTTTTTAAGTGTATCAAATATACCTTCTATGC 50532 Query 63562 TATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCAT 63621 |||| || |||| | | |||||| ||||||||||| ||||| ||||| |||| Sbjct 50531 TATCGTCTTTCATTGCCAACAAAAAACAACTAGACATTTGAGGACGAGGTGTTCCAGCAT 50472 Query 63622 TAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG-TAGATTGTACGTCTCA 63680 | |||||||| |||| || || |||||||| ||| || | ||| || || || || Sbjct 50471 TGAATAAGGTTGGAGTTGCATGAGTAAACCAACGTTCTGACATATAG-TTATATGTTTCT 50413 Query 63681 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 63740 || || || || ||||| ||| || || || || || | ||| ||||| || ||| Sbjct 50412 ATTGCAGATTCAATATCATCAAAATGTATACCAACAGCAACTCTCATCAACATATGTTGA 50353 Query 63741 GGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAA 63800 |||||||| || || || | ||| |||| | || ||| |||| | ||||||||| Sbjct 50352 GGTCTTTCCACAATTTTTCCATCTATCTTCATTAGATAAGATCTTTCAAGGGTTTTAAAA 50293 Query 63801 CCAAAATAG 63809 ||||||||| Sbjct 50292 CCAAAATAG 50284 Score = 100 bits (110), Expect = 4e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 63970 TTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGAT 64029 ||||||| ||||| ||||| ||||| | ||||| || |||| ||| |||||||| |||| Sbjct 49460 TTGTTTCTTTGTGGAGATTAGATACAACAATTCTAGCAGCTAAAATAGCATAATCTGGAT 49401 Query 64030 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 64089 || ||||||| | || || ||||| || || | | || | ||| | ||||||| Sbjct 49400 GTCGTGTAGTCATTGAAGCAGCAATTTCCGCAGCTAAGTTATCTAGTTCAATAGTTGTTA 49341 Query 64090 CTCCATTATATATTCCTTGAATAACCTT 64117 ||||| ||||||||| | |||||| || Sbjct 49340 CTCCAGCATATATTCCATTAATAACTTT 49313 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 62019 GGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGC 62078 || || | ||||| |||||||||||| ||||| ||||| ||||||| ||||| ||| Sbjct 52145 GGCTTTGAACGTAAATAGTACATTCCAGTTTTGAGACCTTTCTTCCATCCATAAAAGTGC 52086 Query 62079 ATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGA 62138 | ||| || || | | | || ||||| ||| ||||| | ||| ||||||||| Sbjct 52085 AAACTTGTCAGACGACCAAAGTTTGGCTCTGCCATAAATATATTGAGAGACTGACTTTGA 52026 Query 62139 TCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA-ATTTCCCA 62197 || || ||||| || | || || ||||| | | | | ||| |||| |||||||| Sbjct 52025 TCAATAAAGGCACCTCGATCAGCTGCCATGTCAACCA-AGGATTTCATGGACATTTCCCA 51967 Query 62198 AATAGTTTTATAAACTCGCTTAATATCTTCTGG 62230 |||||||||| || ||| | || |||||| Sbjct 51966 TGCTGTTTTATAAAGTCTCTTTAAATGTTCTGG 51934 >seq1531 Length=18023 Score = 132 bits (146), Expect = 6e-26 Identities = 144/186 (77%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624 ||||||| ||| || || || || | ||||||||||| |||||||| |||||||| || Sbjct 8606 TCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCA 8665 Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGTACTTC-TGTACAAAATCGTT 33682 || |||||||| || || |||||||||| || || |||||||| | | ||||| | || Sbjct 8666 ATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCAT-TGTACTTCATTTGCAAAA-CATT 8723 Query 33683 CCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 33742 | ||| |||||||| || || || ||||| || ||||| || ||||||| ||| || Sbjct 8724 CAACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATA 8783 Query 33743 TAAAAT 33748 |||||| Sbjct 8784 TAAAAT 8789 Score = 82.4 bits (90), Expect = 1e-10 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 33766 AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGAT 33825 || |||||||| || | ||| | |||| |||||||| || ||||||||||||||| Sbjct 8857 AGCTTATTCCAGTCGGCTAAGTCTCTCGATAAGTCTACTTCCTCAACTGTCCAAAATGAT 8916 Query 33826 GCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAAT 33885 ||| | || |||||||| | |||||| ||||| || | ||| || | |||| || Sbjct 8917 GCCACAGCTCGCTTATACATTTCCCAGATATCATAGCGTTCCAATGGAAACACAACATAT 8976 Query 33886 CTATTTGGAT 33895 ||||| |||| Sbjct 8977 CTATTGGGAT 8986 >seq1530 Length=18023 Score = 132 bits (146), Expect = 6e-26 Identities = 144/186 (77%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624 ||||||| ||| || || || || | ||||||||||| |||||||| |||||||| || Sbjct 8606 TCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCA 8665 Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGTACTTC-TGTACAAAATCGTT 33682 || |||||||| || || |||||||||| || || |||||||| | | ||||| | || Sbjct 8666 ATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCAT-TGTACTTCATTTGCAAAA-CATT 8723 Query 33683 CCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 33742 | ||| |||||||| || || || ||||| || ||||| || ||||||| ||| || Sbjct 8724 CAACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATA 8783 Query 33743 TAAAAT 33748 |||||| Sbjct 8784 TAAAAT 8789 Score = 82.4 bits (90), Expect = 1e-10 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 33766 AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGAT 33825 || |||||||| || | ||| | |||| |||||||| || ||||||||||||||| Sbjct 8857 AGCTTATTCCAGTCGGCTAAGTCTCTCGATAAGTCTACTTCCTCAACTGTCCAAAATGAT 8916 Query 33826 GCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAAT 33885 ||| | || |||||||| | |||||| ||||| || | ||| || | |||| || Sbjct 8917 GCCACAGCTCGCTTATACATTTCCCAGATATCATAGCGTTCCAATGGAAACACAACATAT 8976 Query 33886 CTATTTGGAT 33895 ||||| |||| Sbjct 8977 CTATTGGGAT 8986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622934452942920