Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1466 123 2e-23 seq1258 123 2e-23 seq1155 123 2e-23 seq630 109 5e-19 seq1253 91.5 1e-13 >seq1466 Length=125466 Score = 123 bits (136), Expect = 2e-23 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||| |||||||||||||||||||| | || || | ||| | || || Sbjct 71451 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGACCCATCT 71510 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | |||||| || ||| ||||||||||| || || || |||||| Sbjct 71511 GATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 71570 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-AC-GTCAGCGACTATA 26946 || ||||| || | || || || ||||| ||||||| ||||| || ||| || |||| Sbjct 71571 CAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCA--GATTATA 71628 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | ||||||| ||||| || | ||| |||| || |||||| | ||||| Sbjct 71629 ATGTTCAAAAGGAATCAACACTTCATTTGGTACTAAGACTTCGTGGAGG 71677 >seq1258 Length=100613 Score = 123 bits (136), Expect = 2e-23 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||| |||||||||||||||||||| | || || | ||| | || || Sbjct 40210 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGACCCATCT 40269 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | |||||| || ||| ||||||||||| || || || |||||| Sbjct 40270 GATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 40329 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-AC-GTCAGCGACTATA 26946 || ||||| || | || || || ||||| ||||||| ||||| || ||| || |||| Sbjct 40330 CAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCA--GATTATA 40387 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | ||||||| ||||| || | ||| |||| || |||||| | ||||| Sbjct 40388 ATGTTCAAAAGGAATCAACACTTCATTTGGTACTAAGACTTCGTGGAGG 40436 >seq1155 Length=100669 Score = 123 bits (136), Expect = 2e-23 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||| |||||||||||||||||||| | || || | ||| | || || Sbjct 60460 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGACCCATCT 60401 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | |||||| || ||| ||||||||||| || || || |||||| Sbjct 60400 GATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAA 60341 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-AC-GTCAGCGACTATA 26946 || ||||| || | || || || ||||| ||||||| ||||| || ||| || |||| Sbjct 60340 CAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCA--GATTATA 60283 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | ||||||| ||||| || | ||| |||| || |||||| | ||||| Sbjct 60282 ATGTTCAAAAGGAATCAACACTTCATTTGGTACTAAGACTTCGTGGAGG 60234 >seq630 Length=36350 Score = 109 bits (120), Expect = 5e-19 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||| | |||||| ||||||||||| | || || | ||| | || | Sbjct 225 AATGCAGATTTTTATTAAAACACTAACTGGAAAAACTATTACACTTGAAGTGGATCCTTC 166 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || || | || ||| ||||| ||||| ||||| |||||||| ||||| Sbjct 165 TGACACTATTGAAAATGTAAAATCTAAGATCCAAGACAAGGAAGGTATACCTCCAGATCA 106 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||||| | |||| | || |||||| | ||||||| |||| | | ||||| || Sbjct 105 ACAAAGATTGATTTTTGCTGGAAAACAATTGGAAGATGGAAGAACCCTTTCGGACTACAA 46 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGG 26992 ||||||| ||||| || ||||||| || || || | ||||| Sbjct 45 TGTTCAAAAGGAATCCACCCTCCATCTTGTTCTTCGATTAAGAGG 1 >seq1253 Length=11614 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 26793 ACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAA 26852 ||||||||| | || || | ||| | || | ||||| || || | || ||| Sbjct 11614 ACTGGAAAAACTATTACACTTGAAGTGGATCCTTCTGACACTATTGAAAACGTAAAATCT 11555 Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912 ||||| ||||| ||||| |||||||| |||||||||||| | |||| | || ||| Sbjct 11554 AAGATCCAAGACAAGGAAGGTATACCTCCAGATCAACAAAGATTGATTTTTGCTGGAAAA 11495 Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCAT 26972 ||| | ||||||| |||| | | ||||| || ||||||| ||||| || ||||| Sbjct 11494 CAATTGGAAGATGGAAGAACCCTTTCGGACTACAATGTTCAAAAGGAATCCACCCTCCAT 11435 Query 26973 CTGGTCCTGAGACTTAGAGGAGG 26995 || || || || | ||||| || Sbjct 11434 CTTGTTCTTCGATTAAGAGGTGG 11412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478652605370640