Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq62 250 6e-61 >seq62 Length=56742 Score = 250 bits (276), Expect = 6e-61 Identities = 951/1476 (64%), Gaps = 55/1476 (4%) Strand=Plus/Plus Query 363434 ATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATT 363493 |||| | ||||| ||| | || || |||||||| ||| | |||||| ||||||| |||| Sbjct 50331 ATGGAAAAATTGTGGAAAGACCTCAACATATGTTGATGAGAGTTGCTGTTGGTATACATT 50390 Query 363494 GCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGT--GCTCGTGTATTCAC 363551 ||| |||| | || || ||||||||||| | || || | ||| || || Sbjct 50391 TTGATGATATTGAATCTGCAATAGAAACATATAAC--TATATGTCAGAACGTTGGTTTAC 50448 Query 363552 GCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTT 363611 || || || ||||| | | |||||||||||| | | ||| || |||||| ||| || Sbjct 50449 TCATGCAACTCCAACCTTATTCAATGCTGGAACACCTCGTCCTCAAATGTCTAGTTGTTT 50508 Query 363612 TCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGC 363671 | | | |||||| |||||| ||| || ||||| ||||| |||||||| || ||||| Sbjct 50509 TTTGTTGGCAATGAAAGACGATAGCATAGAAGGTATATTTGATACACTTAAAAACTGTGC 50568 Query 363672 TCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC--ACAG 363729 | | || ||||| ||| || ||| | || || || || ||| |||| || | Sbjct 50569 TATGATCTCCAAATTTGCCGGTGGAGTGGGACTACATATTCATAATATTCGAGCTTGTGG 50628 Query 363730 AACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTG 363789 ||| || ||| || || || | || ||||| | ||||| | | || || Sbjct 50629 TACA--TATATTGCAGGAACGAATGGTAATTCTAATGGAATTGTTCCACTTTTACGAGTT 50686 Query 363790 TTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCT 363849 | ||||| | | | ||||| ||||| |||||| ||||| ||| | ||||| Sbjct 50687 TACAACAATTGTTCTCGTTACGTTGACCAAGGTGGAAACAAGCGTCCAGGCTCATTTGCC 50746 Query 363850 ATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACG 363909 || ||| | ||||| ||||||||||| | || ||| | || || || ||||| || Sbjct 50747 ATATATTTAGAGCCATGGCATGCCGATATAGTAGAATTTTTAGATCTTCGAAAAAATACT 50806 Query 363910 GGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTT 363969 || | ||||| | ||||| | ||||| |||||||| | ||| | | || ||| Sbjct 50807 GGTAGTGAGGATATTCGTGCTAGGGATCTTTTCTATGCCTTATGGATACCAGATTTGTTT 50866 Query 363970 ATGAAGCGCGTGGAGGCAGGTAA--GAAT-TGGTCACTCTTTTGCCCACACGAATGTCCA 364026 ||||| || || || | |||| |||| |||||||| | ||||| || ||||| || Sbjct 50867 ATGAAACGAGTAGA---AAGTAATGGAATCTGGTCACTTATGTGCCCTCATGAATGCCCT 50923 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGA- 364085 || ||||| ||| | ||||| | | || | || ||| |||||||||| || Sbjct 50924 GGACTTTCGGATTGTTACGGTGAAAAGTTTGAAGAACTGTACATAAAGTATGAAAAAGAA 50983 Query 364086 --GGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143 | || | ||| | |||| || || || ||||||||| ||| | || | Sbjct 50984 GGGCGATACAAACGTCA---AATTGAAGCTCAAAAACTATGGTTTTTCATACTAGAAGCT 51040 Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 || ||||| || || ||| |||||| | ||||||||| | || || | || ||| Sbjct 51041 CAAATTGAAACTGGTCAACCTTATATGCTTTACAAAGATGCTTGTAATAGTAAAAGCAAT 51100 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 || | | |||||| ||| || ||||| || || || || || ||||||||| | Sbjct 51101 CAAAAAAATCTTGGTGTTATTAAGTCTAGCAATCTGTGCACAGAAATAATTGAATACTCA 51160 Query 364264 GCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT---- 364319 | || |||||||| || || || | || ||| | | ||| | ||||| Sbjct 51161 TCAAAGGATGAGACTGCTGTGTGCAATTTAGCATCGTTATCTCTTTCAAAATTTGTTTAT 51220 Query 364320 --AAAAGATGGTA-CTTTTGACCACCAGCA--TCTTTATGACGTAACCTATCAT---GCT 364371 ||| | ||| | || | | | | || || ||| ||| || |||| | | Sbjct 51221 CCTAAATCTAGTACCGATTCAACTAATGTATTTCATTTTGA--TAAACT-TCATACCGTT 51277 Query 364372 AC-----TTGC-------AATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCT 364419 || |||| ||| | |||| ||||| || | || | ||||| ||| | Sbjct 51278 ACAAAAGTTGCTGTTCGTAATTTAAACAAAGTTATTGATAGAAACTTCTATCCTATTATT 51337 Query 364420 GAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCT 364479 |||||| | ||| || ||||||||| | || ||||| |||||||||| || | ||| Sbjct 51338 GAAGCCTATAATTCAAACATGCGTCATAGGCCAATTGGAGTTGGTGTACAAGGATTAGCT 51397 Query 364480 GA--CGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATA 364537 || | ||| ||| || | | |||| | ||||| || ||| |||||| Sbjct 51398 GATGCATTTGTATTAT--TAAGGATGCCTTTTGACAGTGAAGAAGCTAAAAAATTAAATA 51455 Query 364538 AGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAA 364597 | || ||||||||||| ||| || || | || || ||||| || || ||| Sbjct 51456 TACAAATATTTGAAACAATTTATCATGGTGCGCTTGAAGCATCATGTGAATTAGCTAAAG 51515 Query 364598 CCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTG 364657 | || || || || || || ||| | ||||||| | |||| || Sbjct 51516 AATATGGTCCATATGAAACATACGAAGGTAGTCCTATCAGCCAGGGAATTCTTCAGTATG 51575 Query 364658 ATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCA--ACGT 364715 || | |||||||| ||||| ||| | ||| | ||| | ||| | | || | | Sbjct 51576 ATATGTGGAATGTAACGCCTACTGATCTTTGGGATTGGAACACGTT--GAAGCAAGATAT 51633 Query 364716 TAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGC 364775 || ||| ||||| | | || ||| | | | || ||||| || || |||||| | Sbjct 51634 AAAAAAGTATGGTGTTAGAAATAGCCTTTTGATTTCACCTATGCCTACAGCATCTACTTC 51693 Query 364776 ACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCG 364835 ||| || ||||| || || || || ||||| ||||| |||||| ||||||| | || Sbjct 51694 ACAAATTCTCGGCAATAATGAAGCTTTTGAACCTTTTACGAGCAATATTTATTCTAGACG 51753 Query 364836 GGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTA 364871 ||| | || || ||||||| ||||| || ||||| Sbjct 51754 TGTTTTATCAGGTGAATTTCAAGTAGTAAACAAGTA 51789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303326263380134