Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq62 390 1e-103 seq1531 145 1e-29 seq1530 145 1e-29 >seq62 Length=56742 Score = 390 bits (432), Expect = 1e-103 Identities = 1033/1567 (66%), Gaps = 39/1567 (2%) Strand=Plus/Minus Query 62128 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 62187 ||| || || ||||||||||| | ||| | ||| | || || | || | || Sbjct 51841 ATTTTTTATATCATCATTCCAAATATTTAAATTAACCAAATCGCTTAGTAAATACTTGTT 51782 Query 62188 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 62247 |||||||||||||| || || || || | | || |||||||| || ||| | ||||| Sbjct 51781 TACTACTTGAAATTCACCTGATAAAACACGTCTAGAATAAATATTGCTCGTAAAAGGTTC 51722 Query 62248 CACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 62307 | || |||||||| || | |||||| | ||| ||||| || |||||||||| | ||| Sbjct 51721 AAAAGCTTCATTATTGCCGAGAATTTGTGAAGTAGATGCTGTAGGCATAGGTGAAATCAA 51662 Query 62308 TAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTT--TTAGAGGT-TCCCAATTCCA 62364 | |||||||||| ||| || || | || ||||| || | || | ||||| ||| Sbjct 51661 AAGGCTATTTCTAACACCATACTTTTTTAT---ATCTTGCTTCAACGTGTTCCAATCCCA 51605 Query 62365 AAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACG 62423 |||||| | || || || ||||| || | ||| | || Sbjct 51604 AAGATCAGTAGGCGTTACATTCCACATATCATACTGAAGAATTCCCTGGCTGATAGGACT 51545 Query 62424 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 62483 | ||| | ||||| || ||||| || | | | ||||| |||||| || || | | Sbjct 51544 A-CCTTCGTATGTTTCATATGGACCATATTCTTTAGCTAATTCACATGATGCTTCAAGCG 51486 Query 62484 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAA 62543 |||| | |||||| ||||| || || | |||||| | || ||||| || |||| Sbjct 51485 CACCATGATAAATTGTTTCAAATATTTGTATATTTAATTTTTTAGCTTCTTCACTGTCAA 51426 Query 62544 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 62603 | || |||| | | ||| || || ||||||||||| ||||||| || || || | Sbjct 51425 AAGGCATCCTTAATAATACAAATGCATCAGCTAATCCTTGTACACCAACTCCAATTGGCC 51366 Query 62604 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 62663 |||| | | | || || | | ||||| ||||||||| | || |||| |||| || Sbjct 51365 TATGACGCATGTTTGAATTATAGGCTTCAATAATAGGATAGAAGTTTCTATCAATAACTT 51306 Query 62664 TATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC--- 62720 | || | ||| | ||| ||||| || | ||||| ||||| |||| Sbjct 51305 TGTTTAAATTACGAACAGCAACTTTTGTAACGGTATGAAGTTTATCAAAATGAAATACAT 51246 Query 62721 -----------GCCC---ATCTATTACAAACA--TGTTCAATGCAACA--GATGCCAGAT 62762 | | || || | ||||| | || || | | | ||||| | || Sbjct 51245 TAGTTGAATCGGTACTAGATTTAGGATAAACAAATTTTGAAAGAGATAACGATGCTAAAT 51186 Query 62763 TACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACT 62820 | || || || ||||| | || | |||| ||||| || ||||| ||||| || Sbjct 51185 TGCACACAGCAGTCTCATCCTTTGATGAG--TATTCAATTATTTCTGTGCACAGATTGCT 51128 Query 62821 ACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 62880 | |||| || || | ||||| |||||| || || | ||||| ||||| || ||||| Sbjct 51127 AGACTTAATAACACCAAGATTTTTTTGATTGCTTTTACTATTACAAGCATCTTTGTAAAG 51068 Query 62881 AATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC 62940 || | || |||||||||||| |||| ||||| || ||| | | |||| Sbjct 51067 CATATAAGGTTGACCAGTTTCAATTTGAGCTTCTAGTATGAAAAACCATAGTTTTTGAGC 51008 Query 62941 CTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTC 63000 | ||| | |||||||| | |||| |||| || | | |||| | ||| |||| Sbjct 51007 TTCAATTTGACGTTTGTATCGCCCTTCTTTTTCATACTTTATGTACAGTTCTTCAAACTT 50948 Query 63001 GTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCC 63060 || || || || |||||||| ||||||| || ||||| | ||||| ||| Sbjct 50947 TTCACCGTAACAATCCGAAAGTCCAGGGCATTCATGAGGGCACATAAGTGACCAGATTCC 50888 Query 63061 GTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCT 63118 | | | ||| |||||||||||||| | ||| || ||||| | || ||| || ||||| Sbjct 50887 ATTA-CTTTCTACTCGTTTCATAAACAAATCTGGTATCCATAAGGC-ATAGAAAAGATCC 50830 Query 63119 CTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCA 63178 || | | | ||||| | || ||||| ||| |||||| | || | | ||||| Sbjct 50829 CTAGCACGAATATCCTCACTACCAGTATTTTTTCGAAGATCTAAAAATTCTACTATATCG 50770 Query 63179 GAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCT 63238 | |||||| || || || |||||||| | || || || |||||||| || || || Sbjct 50769 GCATGCCATGGCTCTAAATATATGGCAAATGAGCCTGGACGCTTGTTTCCACCTTGGTCA 50710 Query 63239 ATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCA 63298 | ||| | || || || ||||||| || | ||||| ||| ||||| || ||||| Sbjct 50709 ACGTAACGAGAACAATTGTTGTAAACTCGTAAAAGTGGAACAATTCCATTAGAATTACCA 50650 Query 63299 TTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCC 63358 || || |||| ||||| | |||| || ||||||||| ||| ||| || | ||| Sbjct 50649 TTCGTTCCTGCAATATATGTACCACAAGCTCGAATATTATGAATATGTAGTCCCACTCCA 50590 Query 63359 CCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTA 63418 || || | ||| ||||| | || || ||| | |||||| | || || ||||| ||| Sbjct 50589 CCGGCAAATTTGGAGATCATAGCACAGTTTTTAAGTGTATCAAATATACCTTCTATGCTA 50530 Query 63419 TCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTA 63478 || || |||| | | |||||| ||||||||||| ||||| ||||| ||||| Sbjct 50529 TCGTCTTTCATTGCCAACAAAAAACAACTAGACATTTGAGGACGAGGTGTTCCAGCATTG 50470 Query 63479 AATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAG-TAGATTGTACGTCTCAAT 63537 |||||||| |||| || ||||||||||| ||| || | ||| || || || || || Sbjct 50469 AATAAGGTTGGAGTTGCATGAGTAAACCAACGTTCTGACATATAG-TTATATGTTTCTAT 50411 Query 63538 AGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63597 || || || ||||| ||| || || || || || | ||| ||||| || ||||| Sbjct 50410 TGCAGATTCAATATCATCAAAATGTATACCAACAGCAACTCTCATCAACATATGTTGAGG 50351 Query 63598 TCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 63657 |||||| || || || | ||| |||| | || ||| |||| | ||||||||||| Sbjct 50350 TCTTTCCACAATTTTTCCATCTATCTTCATTAGATAAGATCTTTCAAGGGTTTTAAAACC 50291 Query 63658 AAAATAG 63664 ||||||| Sbjct 50290 AAAATAG 50284 Score = 100 bits (110), Expect = 4e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 63825 TTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGAT 63884 ||||||||||||| ||||| ||||| | |||||||| |||| ||| |||||||| |||| Sbjct 49460 TTGTTTCTTTGTGGAGATTAGATACAACAATTCTAGCAGCTAAAATAGCATAATCTGGAT 49401 Query 63885 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 63944 || ||||||| | || || ||||| || || | | || | ||| | ||||||| Sbjct 49400 GTCGTGTAGTCATTGAAGCAGCAATTTCCGCAGCTAAGTTATCTAGTTCAATAGTTGTTA 49341 Query 63945 CACCATTATATATTCCTTGGATAACCTT 63972 | ||| ||||||||| | ||||| || Sbjct 49340 CTCCAGCATATATTCCATTAATAACTTT 49313 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 61874 GGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGC 61933 || || | ||||| |||||||||||| ||||| ||||| ||||||| ||||| ||| Sbjct 52145 GGCTTTGAACGTAAATAGTACATTCCAGTTTTGAGACCTTTCTTCCATCCATAAAAGTGC 52086 Query 61934 ATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGA 61993 | ||| || || | | | || ||||| ||| ||||| | ||| ||||||||| Sbjct 52085 AAACTTGTCAGACGACCAAAGTTTGGCTCTGCCATAAATATATTGAGAGACTGACTTTGA 52026 Query 61994 TCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGA-ATTTCCCA 62052 || || ||||| || | || || ||||| | | | | ||| |||| |||||||| Sbjct 52025 TCAATAAAGGCACCTCGATCAGCTGCCATGTCAACCA-AGGATTTCATGGACATTTCCCA 51967 Query 62053 AATAGTTTTATAAACTCGCTTAATATCTTCTGG 62085 |||||||||| || ||| | || |||||| Sbjct 51966 TGCTGTTTTATAAAGTCTCTTTAAATGTTCTGG 51934 >seq1531 Length=18023 Score = 145 bits (160), Expect = 1e-29 Identities = 147/186 (79%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981 ||||||| |||||| ||||| || | ||||||||||| |||||||| |||||||| || Sbjct 8606 TCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCA 8665 Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTC-GGTAATCTGTACTTC-TGTACAAAATCGTT 33039 ||||||||||| || ||| |||||||||| || || |||||||| | | ||||| | || Sbjct 8666 ATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCAT-TGTACTTCATTTGCAAAA-CATT 8723 Query 33040 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 33099 | | | |||||||| || || || ||||| || ||||| || ||||||| ||| || Sbjct 8724 CAACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATA 8783 Query 33100 TAAAAT 33105 |||||| Sbjct 8784 TAAAAT 8789 Score = 86.0 bits (94), Expect = 8e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 32373 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCC 32432 || ||||| || || |||||||| ||||| |||||||||||||||| ||||||||| Sbjct 7891 TGATATTCCCCAACTCGTTTTTCAAAAAAGTTAGTTTTACCTTCTAGGCTGATATTTTCC 7950 Query 32433 ATGAAATCGAATGGATT 32449 || |||||||||||||| Sbjct 7951 ATAAAATCGAATGGATT 7967 Score = 82.4 bits (90), Expect = 1e-10 Identities = 108/147 (73%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 32465 TTTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCAT 32524 ||||| ||||||||| || || || | ||| || |||||||||||||| || || Sbjct 8035 TTTTTCAAATCCCAAAGCAACAAGCAGACGATCAGCTACAAATTCTATATA--CTTACA- 8091 Query 32525 CATTT---CACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 32581 ||| | ||||||||||||| ||||| || || || | ||| || | | |||||||| Sbjct 8092 CATATCAGCACAATTCATTCCAATAAGATTCACAGGTAAAGCTTCACTGAAAAATTCTTT 8151 Query 32582 TTCAATAGAGACCGCGTCTGTTATAAT 32608 ||||||| || || || || ||||| Sbjct 8152 TTCAATATCAACTGCTTCAGTGATAAT 8178 >seq1530 Length=18023 Score = 145 bits (160), Expect = 1e-29 Identities = 147/186 (79%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981 ||||||| |||||| ||||| || | ||||||||||| |||||||| |||||||| || Sbjct 8606 TCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCA 8665 Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTC-GGTAATCTGTACTTC-TGTACAAAATCGTT 33039 ||||||||||| || ||| |||||||||| || || |||||||| | | ||||| | || Sbjct 8666 ATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCAT-TGTACTTCATTTGCAAAA-CATT 8723 Query 33040 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 33099 | | | |||||||| || || || ||||| || ||||| || ||||||| ||| || Sbjct 8724 CAACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATA 8783 Query 33100 TAAAAT 33105 |||||| Sbjct 8784 TAAAAT 8789 Score = 86.0 bits (94), Expect = 8e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 32373 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCC 32432 || ||||| || || |||||||| ||||| |||||||||||||||| ||||||||| Sbjct 7891 TGATATTCCCCAACTCGTTTTTCAAAAAAGTTAGTTTTACCTTCTAGGCTGATATTTTCC 7950 Query 32433 ATGAAATCGAATGGATT 32449 || |||||||||||||| Sbjct 7951 ATAAAATCGAATGGATT 7967 Score = 82.4 bits (90), Expect = 1e-10 Identities = 108/147 (73%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 32465 TTTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCAT 32524 ||||| ||||||||| || || || | ||| || |||||||||||||| || || Sbjct 8035 TTTTTCAAATCCCAAAGCAACAAGCAGACGATCAGCTACAAATTCTATATA--CTTACA- 8091 Query 32525 CATTT---CACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 32581 ||| | ||||||||||||| ||||| || || || | ||| || | | |||||||| Sbjct 8092 CATATCAGCACAATTCATTCCAATAAGATTCACAGGTAAAGCTTCACTGAAAAATTCTTT 8151 Query 32582 TTCAATAGAGACCGCGTCTGTTATAAT 32608 ||||||| || || || || ||||| Sbjct 8152 TTCAATATCAACTGCTTCAGTGATAAT 8178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633619034305200