Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1531 116 4e-21 seq1530 116 4e-21 >seq1531 Length=18023 Score = 116 bits (128), Expect = 4e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || ||||| || ||||| | ||||||||||||||| | ||| || || |||||||| Sbjct 8612 ATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCAATTTGA 8671 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 ||||| || || ||||||| || | || ||||| | | ||| | || || || Sbjct 8672 AATCCATAAAAGAATCTAGCCTCAGGCCATTGTACTTCATTTGCAAAACATTCAACCAGG 8731 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 |||||||| || |||||||| || ||||| || ||||||||||| |||||||||| Sbjct 8732 TTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATATAAAATGT 8791 Query 93542 TTCTCAT 93548 |||||| Sbjct 8792 CTCTCAT 8798 Score = 100 bits (110), Expect = 3e-16 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 |||||||||||||||||| |||| | |||| | ||||||||||||| | |||| || Sbjct 8065 ATCAGCTACAAATTCTATATACTTACACATATCAGCACAATTCATTCCAATAAGATTCAC 8124 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045 ||||| ||| || | || || ||||| || || |||| ||||| | | |||| | | Sbjct 8125 AGGTAAAGCTTCACTGAAAAATTCTTTTTCAATATCAACTGCTTCAGTGATAATTTGTTT 8184 Query 93046 TACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGT 93105 ||| | | || |||||| | | | || || |||||||||| ||||| || || Sbjct 8185 GACTAAATCAAATGATGGTTTGTATTTTATGTAGTTAAACATTAAGCAAGCAAAATCAGT 8244 Query 93106 ATGTAAACCTTCGTCTC--GTGATATCAACTCATTGCTGAA 93144 || | ||||| |||| ||||| | ||||| ||||| Sbjct 8245 GTGAAGTCCTTCATCTCTACTGATA--AGTTCATTACTGAA 8283 >seq1530 Length=18023 Score = 116 bits (128), Expect = 4e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || ||||| || ||||| | ||||||||||||||| | ||| || || |||||||| Sbjct 8612 ATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCAATTTGA 8671 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 ||||| || || ||||||| || | || ||||| | | ||| | || || || Sbjct 8672 AATCCATAAAAGAATCTAGCCTCAGGCCATTGTACTTCATTTGCAAAACATTCAACCAGG 8731 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 |||||||| || |||||||| || ||||| || ||||||||||| |||||||||| Sbjct 8732 TTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATATAAAATGT 8791 Query 93542 TTCTCAT 93548 |||||| Sbjct 8792 CTCTCAT 8798 Score = 100 bits (110), Expect = 3e-16 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 |||||||||||||||||| |||| | |||| | ||||||||||||| | |||| || Sbjct 8065 ATCAGCTACAAATTCTATATACTTACACATATCAGCACAATTCATTCCAATAAGATTCAC 8124 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045 ||||| ||| || | || || ||||| || || |||| ||||| | | |||| | | Sbjct 8125 AGGTAAAGCTTCACTGAAAAATTCTTTTTCAATATCAACTGCTTCAGTGATAATTTGTTT 8184 Query 93046 TACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGT 93105 ||| | | || |||||| | | | || || |||||||||| ||||| || || Sbjct 8185 GACTAAATCAAATGATGGTTTGTATTTTATGTAGTTAAACATTAAGCAAGCAAAATCAGT 8244 Query 93106 ATGTAAACCTTCGTCTC--GTGATATCAACTCATTGCTGAA 93144 || | ||||| |||| ||||| | ||||| ||||| Sbjct 8245 GTGAAGTCCTTCATCTCTACTGATA--AGTTCATTACTGAA 8283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556849405235880