Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq1466 87.8 2e-12 seq1258 87.8 2e-12 seq1155 87.8 2e-12 >seq1466 Length=125466 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||| | ||||| | || || ||||| ||||| | ||| || |||| | Sbjct 71451 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGA-CCCATC 71509 Query 111247 -GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| || | | | || ||| |||||| ||||||||||| |||| ||||| Sbjct 71510 TGATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCA 71569 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||| || || || | || || || ||| | |||||| || ||| | | |||||||| Sbjct 71570 ACAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCAGATTATAA 71629 Query 111366 TATACAAAAAGAATCTACACTACATTTAGT 111395 | | ||||| ||||| ||||| ||||| || Sbjct 71630 TGTTCAAAAGGAATCAACACTTCATTTGGT 71659 >seq1258 Length=100613 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||| | ||||| | || || ||||| ||||| | ||| || |||| | Sbjct 40210 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGA-CCCATC 40268 Query 111247 -GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| || | | | || ||| |||||| ||||||||||| |||| ||||| Sbjct 40269 TGATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCA 40328 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||| || || || | || || || ||| | |||||| || ||| | | |||||||| Sbjct 40329 ACAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCAGATTATAA 40388 Query 111366 TATACAAAAAGAATCTACACTACATTTAGT 111395 | | ||||| ||||| ||||| ||||| || Sbjct 40389 TGTTCAAAAGGAATCAACACTTCATTTGGT 40418 >seq1155 Length=100669 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||| | ||||| | || || ||||| ||||| | ||| || |||| | Sbjct 60460 ATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTGA-CCCATC 60402 Query 111247 -GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| || | | | || ||| |||||| ||||||||||| |||| ||||| Sbjct 60401 TGATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCACCAGATCA 60342 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||| || || || | || || || ||| | |||||| || ||| | | |||||||| Sbjct 60341 ACAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCAGATTATAA 60282 Query 111366 TATACAAAAAGAATCTACACTACATTTAGT 111395 | | ||||| ||||| ||||| ||||| || Sbjct 60281 TGTTCAAAAGGAATCAACACTTCATTTGGT 60252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423031559955400