Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1466 129 5e-25 seq1258 129 5e-25 seq1155 129 5e-25 seq62 127 2e-24 seq630 123 2e-23 seq1253 93.3 4e-14 >seq1466 Length=125466 Score = 129 bits (142), Expect = 5e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 |||| ||||||| |||||| | ||||| ||||| || ||||| | ||||||||||| | Sbjct 71443 TTGTTTAGATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTG 71502 Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 | | | ||||| | || || ||||| |||||||||||||| || |||||||||| Sbjct 71503 ACCCATCTGATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCAC 71562 Query 22331 CCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390 | |||||||| | || ||||| || || || || | || ||| | || | || | Sbjct 71563 CAGATCAACAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCAG 71622 Query 22391 ATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||| || ||||||| ||||| || | ||||| || | || | || |||||| Sbjct 71623 ATTATAATGTTCAAAAGGAATCAACACTTCATTTGGTACTAAGACTTCGTGGAGGT 71678 >seq1258 Length=100613 Score = 129 bits (142), Expect = 5e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 |||| ||||||| |||||| | ||||| ||||| || ||||| | ||||||||||| | Sbjct 40202 TTGTTTAGATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTG 40261 Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 | | | ||||| | || || ||||| |||||||||||||| || |||||||||| Sbjct 40262 ACCCATCTGATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCAC 40321 Query 22331 CCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390 | |||||||| | || ||||| || || || || | || ||| | || | || | Sbjct 40322 CAGATCAACAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCAG 40381 Query 22391 ATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||| || ||||||| ||||| || | ||||| || | || | || |||||| Sbjct 40382 ATTATAATGTTCAAAAGGAATCAACACTTCATTTGGTACTAAGACTTCGTGGAGGT 40437 >seq1155 Length=100669 Score = 129 bits (142), Expect = 5e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 |||| ||||||| |||||| | ||||| ||||| || ||||| | ||||||||||| | Sbjct 60468 TTGTTTAGATGCAGATTTTTATAAAAACATTAACTGGAAAAACTATTACTCTTGAAGTTG 60409 Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 | | | ||||| | || || ||||| |||||||||||||| || |||||||||| Sbjct 60408 ACCCATCTGATACTATAGAAAATGTCAAAAGTAAAATTCAAGACAAAGAAGGTATTCCAC 60349 Query 22331 CCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390 | |||||||| | || ||||| || || || || | || ||| | || | || | Sbjct 60348 CAGATCAACAGAGACTGATATTCGCTGGAAAGCAACTTGAAGATGGTAGAACACTTTCAG 60289 Query 22391 ATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||| || ||||||| ||||| || | ||||| || | || | || |||||| Sbjct 60288 ATTATAATGTTCAAAAGGAATCAACACTTCATTTGGTACTAAGACTTCGTGGAGGT 60233 >seq62 Length=56742 Score = 127 bits (140), Expect = 2e-24 Identities = 1021/1624 (63%), Gaps = 103/1624 (6%) Strand=Plus/Minus Query 128782 TCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCTGTT 128841 || || ||||||||||| |||| || | ||||| | || ||||||||||| || ||| Sbjct 52175 TCAACAGTAAATTTAATTGCGTTAGCACCAGGCTTTGAACGTAAATAGTACATTCCAGTT 52116 Query 128842 TTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCA-ACAATGCGTAGGTGGGTTG 128900 || | ||| | ||||| | | ||| | | |||| || | | || | || | Sbjct 52115 TTGAGACCTTTCTTCCATCCATAAAAGTGCAAACTTGTCAGACGAC-CAAAGTTTGGCTC 52057 Query 128901 ACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCAT 128960 || ||| ||||| | || ||||||||||||||||||| || ||||| || ||||| Sbjct 52056 TGCCATAAATATATTGAGAGACTGACTTTGATCAATAAAGGCACCTCGATCAGCTGCCAT 51997 Query 128961 ACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTC-ACGTGTT 129019 ||| ||| ||||| ||||||||| | ||||| ||||| ||||| | |||| Sbjct 51996 GTCAACCAAGGATTTCATGGACATTTCCCATGCTGTTTTATAAAG-TCTCTTTAAATGTT 51938 Query 129020 TTGGTATTTCTTCAATGTTCTG-CACG--------------------------------- 129045 |||||| | || || |||| || | Sbjct 51937 CTGGTATAGCATCTATATTCTAACAAGGTATCAAATCAATAGAGTGCATAAATTAAGAGA 51878 Query 129046 -----------CTG--CCGTTGTTTGCAATAATTTTGTTTCGCATCTGTTCGTTGTACAA 129092 ||| || ||||| ||||||| || ||| || | || || | | Sbjct 51877 AATTACTTGAACTGAACCATTGTTGGCAATAAGTTGATTTTTTATATCATCATTCCAAAT 51818 Query 129093 ATTCAGTTTGATCAAATCG-TCGGTCAAGTATTTGTTTATTACTTGAAAGTCACCCGCCA 129151 ||| | || | ||||||| | || || || ||||||| ||||||||| ||||| | | Sbjct 51817 ATTTAAATTAACCAAATCGCTTAGTAAA-TACTTGTTTACTACTTGAAATTCACCTGATA 51759 Query 129152 AAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCATTGTTGCCTAATA 129211 |||| || | | ||||| ||| | || || || ||||| | |||||| ||||| | | Sbjct 51758 AAACACGTCTAGAATAAATATTGCTCGTAAAAGGTTCAAAAGCTTCATTATTGCCGAGAA 51699 Query 129212 TTTGAGCCGTTGTCGCGGTGGGCAT--GT-AAGCCACGCAAAGCGAGTTTCGCAAACCGT 129268 |||| | || | || || ||||| || || || || || | |||| | ||| | Sbjct 51698 TTTGTGAAGTAGATGCTGTAGGCATAGGTGAAATCAA--AAGGCTA-TTTCTAACACCAT 51642 Query 129269 GCTGTTTAATGTCtttttttAATTGTGT-CCAGTCCCACATCGAT--GTGGGTGTGTGAT 129325 || ||| || |||| || || |||| ||| ||||| | ||| || || || || Sbjct 51641 ACTTTTTTATATCTTGCTTCAAC-GTGTTCCAATCCCAAA--GATCAGTAGGCGTTACAT 51585 Query 129326 TCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAGTAGGAATCGTGCA 129385 |||||| || || || | || ||| ||| ||||| ||| | || | Sbjct 51584 TCCACATATCATACTGAAGAATTCCCTGGCTGATAGGACTACCTTCGTATGTTTCATATG 51525 Query 129386 CGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAAATTGTTTCGG 129445 || || |||| || ||||| || ||||| | || ||| |||||||||||| Sbjct 51524 GACCATATTCTTTAGCTAATTCACATGATGCTTCAAGCGCACCATGATAAATTGTTTCAA 51465 Query 129446 CAATTTTGGTGTTCAACACTTTGGCCTGGTCGCTTTCGTACGGCATACGCAACATGGCAA 129505 |||| | || || ||| || | || || || | ||||| | || | ||| Sbjct 51464 ATATTTGTATATTTAATTTTTTAGCTTCTTCACTGTCAAAAGGCATCCTTAATAATACAA 51405 Query 129506 ATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGATTTTT 129565 ||| || || || ||||| | ||| || || || || | ||| | || || || | Sbjct 51404 ATGCATCAGCTAATCCTTGTACACCAACTCCAATTGGCCTATGACGCATGTTTGAATTAT 51345 Query 129566 GTGCCGACAACAAG-GGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTGACCACA 129624 || ||| || |||||| |||| | || |||| |||||||||||| || || Sbjct 51344 AGGCTT-CAATAATAGGATAGAAGTTTCTATCAATAACTTTGTTTAAATTACGAACAGCA 51286 Query 129625 ATTTTCGTTACG-TAT----TTTAACATT-TCAAA---ATT-GT--ACTCGC--CTACAT 129670 | ||| || ||| ||| |||| || | ||| ||| || | ||| ||| || Sbjct 51285 ACTTTTGTAACGGTATGAAGTTTATCAAAATGAAATACATTAGTTGAATCGGTACTAGAT 51226 Query 129671 CGATG-TCGACAAATTGATTGACACAAAT--CGAGGCCAAATTGCAGACGGCACTTTCGT 129727 | | | ||||||| |||| | | || ||| || |||||||| || ||| | || | Sbjct 51225 TTAGGATAAACAAATT--TTGAAAGAGATAACGATGCTAAATTGCACACAGCAGTCTCAT 51168 Query 129728 T-TTTG-TCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAA 129785 |||| | | ||| || | ||||| | ||||| ||| ||| ||||| || | Sbjct 51167 CCTTTGATGA--GTATTCAATTATTTCTGTGCACAGATTGCTAGACTTAATAACACCAAG 51110 Query 129786 ATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGT 129845 || |||||||| ||||| | || |||||||||||||| | ||| || || || || Sbjct 51109 ATTTTTTTGATTGCTTTTACTATTACAAGCATCTTTGTAAAGCATATAAGGTTGACCAGT 51050 Query 129846 TTCGACTTGCGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGATCTGTCTTACAAA 129905 ||| | ||| | ||| | ||| | | | | |||| | || || | | | Sbjct 51049 TTCAATTTGAGCTTCTAGTATGAAAAACCATAGTTTTTGAGCTTCAATTTGACGTTTGTA 50990 Query 129906 TTTGCCACATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTC 129965 | || ||| || || | ||||||| |||||| | | |||| || | | Sbjct 50989 TCGCCCTTCTTTTTCATACTTTATGTACAGTTCTTCAAACTTTTCACCGTA-ACAATC-C 50932 Query 129966 GAG---CAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCG 130022 || | | ||| ||||| | || ||||| | ||| ||||||| ||| ||||| Sbjct 50931 GAAAGTCCAGGGC-ATTCATGAGGGCACATAAGTGACCAGATTCCATTACTTTCTACTCG 50873 Query 130023 TTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTC 130082 ||||||||||||||| |||| ||| | ||| || || | ||| | || ||||||| Sbjct 50872 TTTCATAAACAAATCTGGTATCCATAAGGCATAGAAAAGATCCCTAGCACGAATATCCTC 50813 Query 130083 GGCACCCATGTTACGTTTC--AGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCA 130140 ||| | || |||| || || | || || || ||||| ||||| || || Sbjct 50812 ACTACCAGTATT--TTTTCGAAGATCTAAAAATTCTACTATATCGGCATGCCATGGCTCT 50755 Query 130141 ACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGCACGGCA 130197 | ||| || || | || ||| || ||| || ||||||||||||| || | Sbjct 50754 AAATATATGGCAAATGAGCCTGGACGCTTGTTTCCACCTTGGTCAACGTAACGAGAACAA 50695 Query 130198 TTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATG 130257 |||||||| ||||| || | || | | ||| || | | || || || | |||| Sbjct 50694 TTGTTGTAAACTCGTAAAAGTGGAACAATTCCATTAGAATTACCATTCGTTCCTGCAATA 50635 Query 130258 AAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGAT 130317 | | |||| ||| |||| ||||||| ||| || | || ||| ||||||| || Sbjct 50634 TATGTACCACAAGCTCGAATATTATGAATATGTAGTCCCACTCCACCGGCAAATTTGGAG 50575 Query 130318 ATCA 130321 |||| Sbjct 50574 ATCA 50571 >seq630 Length=36350 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||| ||||||| |||| || ||||| | || ||||||||||| | | Sbjct 224 ATGCAGATTTTTATTAAAACACTAACTGGAAAAACTATTACACTTGAAGTGGATCCTTCT 165 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| || || ||||||||||| ||||| || || |||||| Sbjct 164 GACACTATTGAAAATGTAAAATCTAAGATCCAAGACAAGGAAGGTATACCTCCAGATCAA 105 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || ||||| || || ||| | ||| | || || ||||| Sbjct 104 CAAAGATTGATTTTTGCTGGAAAACAATTGGAAGATGGAAGAACCCTTTCGGACTACAAT 45 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 ||||||| ||||||||| | ||| | ||| | ||||| Sbjct 44 GTTCAAAAGGAATCCACCCTCCATCTTGTTCTTCGATT 7 >seq1253 Length=11614 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || ||||| | || ||||||||||| | | || || | || | | ||| Sbjct 11614 ACTGGAAAAACTATTACACTTGAAGTGGATCCTTCTGACACTATTGAAAACGTAAAATCT 11555 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || ||||||||||| ||||| || || ||||||||| | | || ||||| || ||| Sbjct 11554 AAGATCCAAGACAAGGAAGGTATACCTCCAGATCAACAAAGATTGATTTTTGCTGGAAAA 11495 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || || || ||| | ||| | || || ||||| ||||||| ||||||||| | ||| Sbjct 11494 CAATTGGAAGATGGAAGAACCCTTTCGGACTACAATGTTCAAAAGGAATCCACCCTCCAT 11435 Query 22423 TTAGTTTTGCGATT 22436 | ||| | ||||| Sbjct 11434 CTTGTTCTTCGATT 11421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419719626032905