Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1466 140 6e-28 seq1258 140 6e-28 seq1155 140 6e-28 seq630 107 4e-18 seq1253 98.7 2e-15 >seq1466 Length=125466 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| | | |||||| || || || || || ||||| | |||||||| || Sbjct 71677 CCTCCACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAA 71618 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| || |||||||| | ||||| || |||||||| ||||| ||||| || |||||| Sbjct 71617 AGTGTTCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGA 71558 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||||||||| || ||||| || || || || | || || ||| Sbjct 71557 ATACCTTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACT 71498 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || |||||||| || | || || | || |||||||| Sbjct 71497 TCAAGAGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 71451 >seq1258 Length=100613 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| | | |||||| || || || || || ||||| | |||||||| || Sbjct 40436 CCTCCACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAA 40377 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| || |||||||| | ||||| || |||||||| ||||| ||||| || |||||| Sbjct 40376 AGTGTTCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGA 40317 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||||||||| || ||||| || || || || | || || ||| Sbjct 40316 ATACCTTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACT 40257 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || |||||||| || | || || | || |||||||| Sbjct 40256 TCAAGAGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 40210 >seq1155 Length=100669 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| | | |||||| || || || || || ||||| | |||||||| || Sbjct 60234 CCTCCACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCTGAA 60293 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| || |||||||| | ||||| || |||||||| ||||| ||||| || |||||| Sbjct 60294 AGTGTTCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGTGGA 60353 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||||||||| || ||||| || || || || | || || ||| Sbjct 60354 ATACCTTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCAACT 60413 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || |||||||| || | || || | || |||||||| Sbjct 60414 TCAAGAGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCAT 60460 >seq630 Length=36350 Score = 107 bits (118), Expect = 4e-18 Identities = 150/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||| || ||||| | || || || || || || || |||||||| | Sbjct 17 CAAGATGGAGGGTGGATTCCTTTTGAACATTGTAGTCCGAAAGGGTTCTTCCATCTTCCA 76 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 | || || || || || || | ||||||||| || || || || |||||||||||||| | Sbjct 77 ATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCTGGAGGTATACCTTCCTTGTCTTGGA 136 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| | || || || || ||||| | | || ||||| | || || ||||||| Sbjct 137 TCTTAGATTTTACATTTTCAATAGTGTCAGAAGGATCCACTTCAAGTGTAATAGTTTTTC 196 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || || || || | || ||||||||| Sbjct 197 CAGTTAGTGTTTTAATAAAAATCTGCATT 225 >seq1253 Length=11614 Score = 98.7 bits (108), Expect = 2e-15 Identities = 133/184 (72%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||| || ||||| | || || || || || || || |||||||| | Sbjct 11431 CAAGATGGAGGGTGGATTCCTTTTGAACATTGTAGTCCGAAAGGGTTCTTCCATCTTCCA 11490 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 | || || || || || || | ||||||||| || || || || |||||||||||||| | Sbjct 11491 ATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCTGGAGGTATACCTTCCTTGTCTTGGA 11550 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| | || ||| || || ||||| | | || ||||| | || || ||||||| Sbjct 11551 TCTTAGATTTTACGTTTTCAATAGTGTCAGAAGGATCCACTTCAAGTGTAATAGTTTTTC 11610 Query 68434 CCGT 68437 | || Sbjct 11611 CAGT 11614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921603541301640