Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq630 91.5 3e-13 seq1253 84.2 5e-11 >seq630 Length=36350 Score = 91.5 bits (100), Expect = 3e-13 Identities = 153/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 288258 TCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCC 288317 || ||| || ||||| | ||| ||| ||||| | ||| ||||| | || || | ||| Sbjct 9 TCGAAGAACAAGATGGAGGGTGGATTCCTTTTGAACATTGTAGTCCGAAAGGGTTCTTCC 68 Query 288318 GTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTC 288374 ||||| ||||||||||| || || |||| | ||||| |||| || || ||||| Sbjct 69 ATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTG---ATCTGGAGGTATACCTTC 125 Query 288375 TTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGT 288434 || || ||||| || | ||| || ||||| |||| || | || ||||| || || Sbjct 126 CTTGTCTTGGATCTTAGATTTTACATTTTCAATAGTGTCAGAAGGATCCACTTCAAGTGT 185 Query 288435 GATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || || || || | || ||||||||| Sbjct 186 AATAGTTTTTCCAGTTAGTGTTTTAATAAAAATCTGCATT 225 >seq1253 Length=11614 Score = 84.2 bits (92), Expect = 5e-11 Identities = 119/166 (72%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | | || ||| || ||||| | ||| ||| ||||| | ||| ||||| | Sbjct 11412 CCACCTCTTAATCGAAGAACAAGATGGAGGGTGGATTCCTTTTGAACATTGTAGTCCGAA 11471 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || | ||| ||||| ||||||||||| || || |||| | ||||| |||| Sbjct 11472 AGGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTG---ATCTGGA 11528 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAG 288409 || || ||||| || || ||||| || | ||| |||||||| |||| Sbjct 11529 GGTATACCTTCCTTGTCTTGGATCTTAGATTTTACGTTTTCAATAG 11574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179629657854886