Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1466 141 8e-29 seq1258 141 8e-29 seq1155 141 8e-29 seq630 116 3e-21 seq1253 91.5 1e-13 >seq1466 Length=125466 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || || | || | ||| || |||||||||||||| | ||||||||| Sbjct 71680 ATACCTCCACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCT 71621 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || ||| || | ||| ||||| ||| |||||| || || || || || Sbjct 71620 GAAAGTGTTCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGT 71561 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||| ||||||||||| ||||| ||||| || || || | || Sbjct 71560 GGAATACCTTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCA 71501 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| ||||||| ||||| || |||| ||||||| |||||| |||||| Sbjct 71500 ACTTCAAGAGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCATC 71450 >seq1258 Length=100613 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || || | || | ||| || |||||||||||||| | ||||||||| Sbjct 40439 ATACCTCCACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCT 40380 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || ||| || | ||| ||||| ||| |||||| || || || || || Sbjct 40379 GAAAGTGTTCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGT 40320 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||| ||||||||||| ||||| ||||| || || || | || Sbjct 40319 GGAATACCTTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCA 40260 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| ||||||| ||||| || |||| ||||||| |||||| |||||| Sbjct 40259 ACTTCAAGAGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCATC 40209 >seq1155 Length=100669 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || || | || | ||| || |||||||||||||| | ||||||||| Sbjct 60231 ATACCTCCACGAAGTCTTAGTACCAAATGAAGTGTTGATTCCTTTTGAACATTATAATCT 60290 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || ||| || | ||| ||||| ||| |||||| || || || || || Sbjct 60291 GAAAGTGTTCTACCATCTTCAAGTTGCTTTCCAGCGAATATCAGTCTCTGTTGATCTGGT 60350 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||| ||||||||||| ||||| ||||| || || || | || Sbjct 60351 GGAATACCTTCTTTGTCTTGAATTTTACTTTTGACATTTTCTATAGTATCAGATGGGTCA 60410 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| ||||||| ||||| || |||| ||||||| |||||| |||||| Sbjct 60411 ACTTCAAGAGTAATAGTTTTTCCAGTTAATGTTTTTATAAAAATCTGCATC 60461 >seq630 Length=36350 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || ||||||||||| | ||| || || | |||| | ||| ||| Sbjct 16 ACAAGATGGAGGGTGGATTCCTTTTGAACATTGTAGTCCGAAAGGGTTCTTCCATCTTCC 75 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||||||||| || | ||||||| ||| || || || || || ||||| || ||||| Sbjct 76 AATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCTGGAGGTATACCTTCCTTGTCTTGG 135 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||| | ||| | ||||| |||| || ||||| || |||| ||||| Sbjct 136 ATCTTAGATTTTACATTTTCAATAGTGTCAGAAGGATCCACTTCAAGTGTAATAGTTTTT 195 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||| | |||||| ||||| Sbjct 196 CCAGTTAGTGTTTTAATAAAAATCTGCAT 224 >seq1253 Length=11614 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || ||||||||||| | ||| || || | |||| | ||| ||| Sbjct 11430 ACAAGATGGAGGGTGGATTCCTTTTGAACATTGTAGTCCGAAAGGGTTCTTCCATCTTCC 11489 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||||||||| || | ||||||| ||| || || || || || ||||| || ||||| Sbjct 11490 AATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCTGGAGGTATACCTTCCTTGTCTTGG 11549 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||| | ||| | ||||| |||| || ||||| || |||| ||||| Sbjct 11550 ATCTTAGATTTTACGTTTTCAATAGTGTCAGAAGGATCCACTTCAAGTGTAATAGTTTTT 11609 Query 45312 CCGGT 45316 || || Sbjct 11610 CCAGT 11614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451993950884520