Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq62 170 2e-37 >seq62 Length=56742 Score = 170 bits (188), Expect = 2e-37 Identities = 946/1496 (63%), Gaps = 52/1496 (3%) Strand=Plus/Plus Query 111528 AGAGACTACGACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCA-AAG 111586 |||||||| || | | ||||||||| | || ||||| || | | || || ||| Sbjct 50267 AGAGACTATGATTATTCCTATTTTGGTTTTAAAACCCTTGAAAGATCTTATCTAATGAAG 50326 Query 111587 ACTGGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTAT 111646 | | ||||| | |||||| || || | ||||| ||| | || || | ||||| Sbjct 50327 A-TAGATGGAAAAATTGTGGAAAGACCTCAACATATGTTGATGAGAGTTGCTGTTGGTAT 50385 Query 111647 CCATGGGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTT 111706 ||| || |||||||| |||| | || ||||| || | ||||| || ||| Sbjct 50386 ACATTTTGATGATATTGAATCTGCAATAGAAACATATAACTATATGTCAGAACGTTGGTT 50445 Query 111707 CATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTG 111766 | || ||||| |||||| | ||||| ||||| ||||| | || |||||||| ||||| Sbjct 50446 TACTCATGCAACTCCAACCTTATTCAATGCTGGAACACCTCGTCCTCAAATGTCTAGTTG 50505 Query 111767 TTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATG 111826 ||| | | |||| || || ||| || | || || | | || || | | || Sbjct 50506 TTTTTTGTTGGCAATGAAAGACGATAGCATAGAAGGTATATTTGATACACTTAAAAACTG 50565 Query 111827 TGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAA 111886 ||| ||||| || | || ||||| | || | || || ||| || | |||| Sbjct 50566 TGCTATGATCTCCAAATTTGCCGGTGGAGTGGGACTACATATTCATAATATTCGAGCTTG 50625 Query 111887 CAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGT 111946 | |||| ||| || |||||| | || |||| ||| ||||| | | || || Sbjct 50626 TGGTACATATATTGCAGGAACGAATGGTAATTCTAATGGAATTGTTCCACTTTTACGAGT 50685 Query 111947 ATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTAT 112000 | ||| | || || || |||||| ||| ||||| || || || | Sbjct 50686 TTACAACAATTGTTCTCGTTACGTTGACCAAGGTGGAAACAAGCGTC-CA--GGCTCATT 50742 Query 112001 CGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAA 112060 || | ||| | ||||||||||| || ||||| | || || | || | || || Sbjct 50743 TGCCATATATTTAGAGCCATGGCATGCCGATATAGTAGAATTTTTAGATCTTCGAAAAAA 50802 Query 112061 CCAAGGTGATGAGGAGGCGCGGTGCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATC 112119 ||| |||||| || ||| | ||||| |||| || | ||||| |||||| Sbjct 50803 TACTGGTAGTGAGGATATTCG-TGCTAGGGATCTTTTCTATGCCTTATGGATACCAGATT 50861 Query 112120 TCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCA 112178 | || ||||| |||| || | ||| | ||||| || | || || | || || Sbjct 50862 TGTTTATGAAACGAGTAGAAAGTAATGGAATCTGGTCACTTATGTGCCCTCATGAATGC- 50920 Query 112179 CCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAA 112238 || || || || ||| ||||| ||||||||| || |||| |||||| || || Sbjct 50921 CCTGGACTTTCGGATTGTTACGGTGAAAAGTTTGAAGAACTGTACATAAAGTATGAAAAA 50980 Query 112239 GAAAGTCGGGCGACTGCGACGG----TGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAA 112294 ||| |||||| ||| | |||| | | ||| || || | Sbjct 50981 GAA----GGGCGATACAAACGTCAAATTGAAGCTCAAAAACTATGGTTTTTCATACTAGA 51036 Query 112295 GTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAG 112354 |||||| || |||||| ||| ||||||||||||||||| || ||||| || || Sbjct 51037 AGCTCAAATTGAAACTGGTCAACCTTATATGCTTTACAAAGATGCTTGTAATAGTAAAAG 51096 Query 112355 TAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATT 112414 |||||||| ||| | ||||| || ||| | ||| || || |||||||| | |||| Sbjct 51097 CAATCAAAAAAATCTTGGTGTTATTAAGTCTAGCAATCTGTGCACAGAAATAATTGAATA 51156 Query 112415 TACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT 112474 || || |||||||| |||||||| || | ||||| | |||| | || | ||| Sbjct 51157 CTCATCAAAGGATGAGACTGCTGTGTGCAATTTAGCATCGTTATCTCTTTCAAAATTTGT 51216 Query 112475 GGATCC-------AG--------AGACAAAGACATTTGATTATGAAAAACTCCACGAAGT 112519 |||| || || || |||| ||| ||| ||||| || || Sbjct 51217 TTATCCTAAATCTAGTACCGATTCAACTAATGTATTTCATTTTGATAAACTTCATACCGT 51276 Query 112520 TACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGA 112579 ||| ||| || || |||||| ||||||||||||||| || || || || Sbjct 51277 TACAAAAGTTGCTGTTCGTAATTTAAACAAAGTTATTGATAGAAACTTCTATCCTATTAT 51336 Query 112580 GACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGC 112639 || ||| || || ||| | || | |||||||| | ||||| ||||| | || Sbjct 51337 TGAAGCCTATAATTCAAACATGCGTCATAGGCCAATTGGAGTTGGTGTACAAGGATTAGC 51396 Query 112640 GGATGTATT--CATTCTT--TGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCA 112695 |||| ||| ||| || | || | ||||| || ||||| || || | | Sbjct 51397 TGATGCATTTGTATTATTAAGGATGC----CTTTTGACAGTGAAGAAGCTAAAAAATTAA 51452 Query 112696 ATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAG 112755 || | |||||||| ||||| ||||| | || ||||| || | || || || Sbjct 51453 ATATACAAATATTTGAAACAATTTATCATGGTGCGCTTGAAGCATCATGTGAATTAGCTA 51512 Query 112756 AGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC-AGCTTCACAAGGGGTGCTTCAA 112814 | | |||||||||||||||| | || ||| ||| | | | || || | ||||| Sbjct 51513 AAGAATATGGTCCATATGAAACATACGAAGGTAGTCCTATCAGC-CAGGGAATTCTTCAG 51571 Query 112815 TTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGACTGGGACGCTCTCAAGGAAC 112872 | |||||||| |||| || | || | || || | || ||| || | | ||| || Sbjct 51572 TATGATATGT-GGAATGTAACGCCTA-CTGATCTTTGGGATTGGAACACGTTGAAGCAAG 51629 Query 112873 GCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCA 112932 || || || | ||| || | || || |||||||| |||| ||||| ||||| || | Sbjct 51630 ATATAAAAAAGTATGGTGTTAGAAATAGCCTTTTGATTTCACCTATGCCTACAGCATCTA 51689 Query 112933 CCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTAT 112988 | ||||||| | || ||||||||| |||||||| | |||| || || ||| Sbjct 51690 CTTCACAAATTCTCGGCAATAATGAAGCTTTTGAACCTTTTACGAGCAATATTTAT 51745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620729698058640