Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq62 145 9e-30 seq1421 82.4 9e-11 seq1232 82.4 9e-11 >seq62 Length=56742 Score = 145 bits (160), Expect = 9e-30 Identities = 936/1490 (63%), Gaps = 46/1490 (3%) Strand=Plus/Minus Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993 ||| || || |||| | |||||||| ||||||||| || | ||||||| || || Sbjct 51745 ATAAATATTGCTCGTAAAAGGTTCAAAAGCTTCATTATTGCCGAGAATTTGTGAAGTAGA 51686 Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTC 106053 ||||| ||||| |||| |||||||| || || | || ||| | | || || || Sbjct 51685 TGCTGTAGGCATAGGTGAAATCAAAAGGCTATTTCTAACACCATACTTTTTTATATCTTG 51626 Query 106054 CTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGA 106111 ||| | | ||| || | | | || | || | || |||| |||||||| | ||| Sbjct 51625 CTTCAACGTGTTCCAATCCCAAAGATCAG-TAGGCGTTACATTCC-ACATATCATACTGA 51568 Query 106112 AGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCC 106171 || | || ||| | ||| ||| || |||| ||||| | ||| | ||| ||| Sbjct 51567 AGAATTCCCTGGCTGATAGGACTACCTTCGTATGTTTCATATGGACCATATTCTTTAGCT 51508 Query 106172 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 106231 |||||||| || || || | | ||||| || |||||||| || | ||| | Sbjct 51507 AATTCACATGATGCTTCAAGCGCACCATGATAAATTGTTTCAAATATTTGTATATTTAAT 51448 Query 106232 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 106291 | || ||||| || ||||| | | | || | |||| |||| || | ||| Sbjct 51447 TTTTTAGCTTCTTCACTGTCAAAAGGCATCCTTAATAATACAAATGCATCAGCTAATCCT 51388 Query 106292 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGA 106351 || ||||| | ||||| || || || ||||| || || || || || ||| Sbjct 51387 TGTACACCAACTCCAATTGGCCTATGACGCATGTTTGAATTATAGGCTTCAATAATAGGA 51328 Query 106352 TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGA 106411 || || ||||| ||||| ||| ||||| ||| | ||| ||||| | |||| Sbjct 51327 TAGAAGTTTCTATCAATAACTTTGTTTAAATTACGAACAGCAACTTTTGTAACGGTATGA 51268 Query 106412 AGTTTTTCATAATCAAA------AGTGCGAGTCTCTTC----------ATTGACATACTT 106455 ||||| ||| ||| ||| ||| || || | | || ||| | || Sbjct 51267 AGTTTATCAAAATGAAATACATTAGTT-GAATCGGTACTAGATTTAGGATAAACAAATTT 51209 Query 106456 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 106515 || ||| | | ||||| |||||||| ||||| ||||||||||| || ||| || | Sbjct 51208 TGAAAGAGATAACGATGCTAAATTGCACACAGCAGTCTCATCCTTTGATGAGTATTCAAT 51149 Query 106516 AATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTT 106575 |||||||| |||| ||| | |||||| || | ||| ||||| || || || | Sbjct 51148 TATTTCTGTGCACAGATTGCTAGACTTAATAACACCAAGATTTTTTTGATTGCTTTTACT 51089 Query 106576 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAAT 106635 || || ||||| ||||| ||||| || || || || || | || | | || || Sbjct 51088 ATTACAAGCATCTTTGTAAAGCATATAAGGTTGACCAGTTTCAATTTGAGCTTCTAGTAT 51029 Query 106636 TGCCTTCCACACATCGGCGGCTGGTACAAT--GGCGTTGGCC-CGTCCCTCCGCCTCGTA 106692 ||| | | ||| |||| | |||| | || || || || || Sbjct 51028 GAAAAACCATAGTTTTTGAGCTT---CAATTTGACGTTTGTATCGCCCTTCTTTTTCATA 50972 Query 106693 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTG-T 106751 |||| |||| || ||||||||| ||||| || || || || || || || | Sbjct 50971 CTTTATGTACAGTTCTTCAAACTTTTCACCGTAACAATCCGAAAGTCCAGG-GCATTCAT 50913 Query 106752 CTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 106811 || || | ||| ||||| ||| || || || ||||| || | ||||| | Sbjct 50912 GAGGGCACATAAGTGACCAGATTCCATTACTTTCTACTCGTTTCATAAACAAATCTGGTA 50853 Query 106812 TCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTA 106871 |||| | || | || ||||| ||| ||| || || ||| || ||| | Sbjct 50852 TCCATAAGGCATAGAAAAGATCCCTAGCACGAATATCCTCACTACCAGTATTTTTTCGAA 50793 Query 106872 ACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCT 106931 || | || || | ||||| || ||||||||||| | ||| | || | || || Sbjct 50792 GATCTAAAAATTCTACTATATCGGCATGCCATGGCTCTAAATATATGGCAAATGAGCC-- 50735 Query 106932 TTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 106985 | ||||| ||| |||| | || || || | ||| | || || | | Sbjct 50734 -TGGACGCTTGTTTCCACCTTGGTCAACGTAACGAGAACAATTGTTGTAAACTCGTAAAA 50676 Query 106986 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCA 107045 ||||| ||| |||| || | |||||| || || |||| | | |||| | Sbjct 50675 GTGGAACAATTCCATTAGAATTACCATTCGTTCCTGCAATATATGTACCACAAGCTCGAA 50616 Query 107046 CATCATGGATGTGCA-TCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 107104 || ||| || || | ||||| | || || || | || ||||| ||||| | || Sbjct 50615 TATTATGAATATGTAGTCCCACT-CCACCGGCAAATTTGGAGATCATAGCACAGTTTTTA 50557 Query 107105 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 107164 || || || | ||||| | || || || || | || | | || ||||| ||| Sbjct 50556 AGTGTATCAAATATACCTTCTATGCTATCGTCTTTCATTGCCAACAAAAAACAACTAGAC 50497 Query 107165 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 107224 || || || | ||||| ||||||||||| | |||||| ||||| ||| | ||| || | Sbjct 50496 ATTTGAGGACGAGGTGTTCCAGCATTGAATAAGGTTGGAGTTGCATGAGTAAACCAACGT 50437 Query 107225 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATG 107284 | ||||| | || ||||| || | |||| ||||| || || || || || | Sbjct 50436 TCTGACATATAGTTATATGTTTCTATTGCAGATTCAATATCATCAAAATGTATACCAACA 50377 Query 107285 GCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGC--CGTTGAA 107342 || || | ||| ||||| | ||| ||| |||||| | | ||||| | | | || | Sbjct 50376 GCAACTCTCATCAACATATGTTGAGGTCTTTCCACAATTTTTCCATCTATCTTCATT--A 50319 Query 107343 GAT-AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 107391 ||| || |||| ||||||||||| | |||||| || | |||||||||| Sbjct 50318 GATAAGATCTT-TCAAGGGTTTTAAAACCAAAATAGGAATAATCATAGTC 50270 >seq1421 Length=24267 Score = 82.4 bits (90), Expect = 9e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||||||||||||||| || | |||| ||||| ||||| || || ||||||| Sbjct 17171 ACAGCATCAATCTCATCAATAAAAATAATAGCTGGTTTATTTTTTCGTGCAGTTTCAAAA 17230 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 |||| | ||| || || ||||| ||||||||||| | ||||| | || | | ||| Sbjct 17231 AGATTTCTAACTCTAGCAGCTCCCACTCCAACAAACATTTGTACAAAATCTGAGCCAGAA 17290 Query 9489 CAT 9491 ||| Sbjct 17291 CAT 17293 >seq1232 Length=24281 Score = 82.4 bits (90), Expect = 9e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||||||||||||||| || | |||| ||||| ||||| || || ||||||| Sbjct 7111 ACAGCATCAATCTCATCAATAAAAATAATAGCTGGTTTATTTTTTCGTGCAGTTTCAAAA 7052 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 |||| | ||| || || ||||| ||||||||||| | ||||| | || | | ||| Sbjct 7051 AGATTTCTAACTCTAGCAGCTCCCACTCCAACAAACATTTGTACAAAATCTGAGCCAGAA 6992 Query 9489 CAT 9491 ||| Sbjct 6991 CAT 6989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589968727517880