Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq62 93.3 6e-14 seq1466 84.2 3e-11 >seq62 Length=56742 Score = 93.3 bits (102), Expect = 6e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 104959 tttAGATTCTTGTGGATTTCACTTTCGAAAAGAAGGTGATTTAGGACCAATTTATGGATT 105018 |||||||||| |||| |||| ||| ||||||| ||| | || || | ||||| || Sbjct 53902 TTTAGATTCTATTGGACTTCATCATCGTGAAGAAGGGGATCTTGGTCCTGTCTATGGCTT 53843 Query 105019 TCAATGGAGACATGCTGGAGCTCAATATATCGACTGTG-ATACCGACTATACCGGCCAAG 105077 ||||||||| ||| ||||||||||||| |||| | || ||||| | ||| ||||| | Sbjct 53842 TCAATGGAGGCATTTTGGAGCTCAATATGTCGA-TATGCATACCAATTATGATGGCCAGG 53784 Query 105078 GTATAGACCAATTAAGTCAAGTTAT 105102 || |||| ||| | | ||||||| Sbjct 53783 GTGTAGATCAACTTGCTGAAGTTAT 53759 >seq1466 Length=125466 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 182996 TACAATGCAGATTTTGATGGAGATGAAATGAATTTACATGTTCCTCAGTCGTATGAAGCT 183055 || ||||| || |||||||| |||||||||||| | ||||| |||||||||| |||||| Sbjct 5835 TATAATGCTGACTTTGATGGTGATGAAATGAATATGCATGTACCTCAGTCGTTAGAAGCT 5894 Query 183056 ACCGCTGAATTAATGGAATTA 183076 | ||||||||| |||||| Sbjct 5895 AAAGCTGAATTACAAGAATTA 5915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658389727424520