Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kudoa_20iwatai_20[genbank_20GCA_5F001407235.1_202015-10-22] 1,637 sequences; 31,177,209 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq62 554 5e-153 seq1531 154 2e-32 seq1530 154 2e-32 >seq62 Length=56742 Score = 554 bits (614), Expect = 5e-153 Identities = 1065/1562 (68%), Gaps = 53/1562 (3%) Strand=Plus/Minus Query 47319 TTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTA---TATATATTACTTGTATAT 47375 || || | ||||||||| || |||| || ||| ||| || ||||| || ||| | Sbjct 51783 TTTACTACTTGAAATTCACCTGATAAAAC---ACGTCTAGAATAAATATTGCTCGTAAAA 51727 Query 47376 GGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCA 47435 ||||| | || ||||||||| || | |||||| | ||| |||||||||||||| | || | Sbjct 51726 GGTTCAAAAGCTTCATTATTGCCGAGAATTTGTGAAGTAGATGCTGTAGGCATAGGTGAA 51667 Query 47436 ACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCC 47495 | || | ||||||||| || ||||| |||| ||| | ||||||||| Sbjct 51666 ATCAAAAGGCTATTTCTAACACCATACTTTTTTATATCTTGCTTCAACGTGTTCCAATCC 51607 Query 47496 CAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGA 47555 |||||||| | || |||||||| | |||||| ||||||||||| | || || ||| Sbjct 51606 CAAAGATCAGTAGGCGTTACATTCCACATATCATACTGAAGAATTCCCTGGCTGATAGGA 51547 Query 47556 GAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAAT 47615 ||| | ||||||| ||| ||||| ||| |||||| | |||||| |||||| | Sbjct 51546 CTACCTTCGTATGTTTCATATGGACCATATTCTTTAGCTAATTCACATGATGCTTCAAGC 51487 Query 47616 GCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCA 47675 |||| || ||| |||||||||||||||| ||| |||| || | |||||| ||| Sbjct 51486 GCACCATGATAAATTGTTTCAAATATTTGTATATTTAATTTTTTAGCTTCTTCACTGTCA 51427 Query 47676 AAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGT 47735 ||||| |||| ||| || |||||||| ||||||| |||||||| Sbjct 51426 AAAGGCATCCTTAATAATACAAATGCATCAGCTAATCCTTGTACACCAACTCCAATTGGC 51367 Query 47736 CTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAAT-GGATATTTGTTTATATCTATAAT 47794 |||||| | || ||| | ||||| |||| ||||| |||| |||| |||| Sbjct 51366 CTATGACGCATGTTTGAATTATAGGCTTCAA-TAATAGGATAGAAGTTTCTATCAATAAC 51308 Query 47795 TTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAA-TTTATTAAAATCAAAC- 47852 ||| |||| | || | | || ||||| ||||| ||| Sbjct 51307 TTTGTTTAAATTACGAACAGCAACTTTTGTAACGG-TATGAAGTTTATCAAAATGAAATA 51249 Query 47853 ---TTGTT-------------ATTTATAACAAACCTATT----AAGTGCTATAGATGCTA 47892 | ||| ||||| | |||| ||| ||| | || ||||||| Sbjct 51248 CATTAGTTGAATCGGTACTAGATTTAGGATAAACAAATTTTGAAAGAGATAACGATGCTA 51189 Query 47893 GATTACATACAGCTACCTCAT--TTGGATTAGTATATTGTATTATTTCAGCACATAGATT 47950 ||| || ||||| ||||| || ||| ||||| | |||||||| | || ||||| Sbjct 51188 AATTGCACACAGCAGTCTCATCCTTTGATGAGTAT--TCAATTATTTCTGTGCACAGATT 51131 Query 47951 ACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTA 48010 | | | || ||| ||| | ||||| ||||| | | ||||| || || ||||| Sbjct 51130 GCTAGACTTAATAACACCAAGATTTTTTTGATTGCTTTTACTATTACAAGCATCTTTGTA 51071 Query 48011 AAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCT 48070 ||||||| ||||| |||||||| || |||| ||| | || | ||| | | Sbjct 51070 AAGCATATAAGGTTGACCAGTTTCAATTTGAGCTTCTAGTATGAAAAACCATAGTTTTTG 51011 Query 48071 AGCCTTTATA--ACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATA-ACTTCT- 48126 ||| | || || | || | || | | ||| || || ||| || | |||| Sbjct 51010 AGCTTCAATTTGACGTTTGTATCGCCCTTCT--TTTTCATACTT--TATGTACAGTTCTT 50955 Query 48127 CAAATTCATCCCCATACACATTATCTAAC-CCAGGACATTCATTAGGACACATCAATGAC 48185 |||| | || || || ||| | || ||||| ||||||| ||| ||||| | |||| Sbjct 50954 CAAACTTTTCACCGTA-ACAATCCGAAAGTCCAGGGCATTCATGAGGGCACATAAGTGAC 50896 Query 48186 CA-ATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 || || | ||| | ||| ||||| ||||||| | |||||||||||| | || ||| | Sbjct 50895 CAGATTC-CATTACTTTCTACTCGTTTCATAAACAAATCTGGTATCCATAAGGC-ATAGA 50838 Query 48245 TAA-ATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCA 48303 || |||||||| | | || ||| | ||| |||| || ||| || | ||| || | Sbjct 50837 AAAGATCCCTAGCACGAATATCCTCACTACCAGTATTTTTTCGAAGATCTAAAAATTCTA 50778 Query 48304 TTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTC 48363 |||||| ||||||||||| ||||||||||| || | | ||||| || || || || | Sbjct 50777 CTATATCGGCATGCCATGGCTCTAAATATATGGCAAATGAGCCTGGACGCTTGTTTCCAC 50718 Query 48364 CTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTG 48423 |||| || | || | | | |||||| ||||||| ||| | ||| ||||| ||||| | Sbjct 50717 CTTGGTCAACGTAACGAGAACAATTGTTGTAAACTCGTAAAAGTGGAACAATTCCATTAG 50658 Query 48424 ATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT-TGAAATA 48482 | ||||||| ||||| | |||||| | |||| ||||| |||||| ||| || | | Sbjct 50657 AATTACCATTCGTTCCTGCAATATATGTACCACAAGCTCGAATATTATGAATATGTAGTC 50598 Query 48483 CCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCT 48542 || | ||||| || | ||| || || | |||||| |||||| |||||| | || ||| Sbjct 50597 CCACT-CCACCGGCAAATTTGGAGATCATAGCACAGTTTTTAAGTGTATCAAATATACCT 50539 Query 48543 TCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTT 48602 ||||| ||||| ||| |||| || | |||||||||||||||||| ||| || ||| Sbjct 50538 TCTATGCTATCGTCTTTCATTGCCAACAAAAAACAACTAGACATTTGAGGACGAGGTGTT 50479 Query 48603 CCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATAT 48662 || | ||| ||||| ||||||| ||||||| ||||||| ||||| | | |||||| Sbjct 50478 CCAGCATTGAATAAGGTTGGAGTTGCATGAGTAAACCAACGTTCTGACATATAGTTATAT 50419 Query 48663 GTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATA 48722 ||||| || |||| || ||||| ||||||||| | || || | ||| |||||| Sbjct 50418 GTTTCTATTGCAGATTCAATATCATCAAAATGTATACCAACAGCAACTCTCATCAACATA 50359 Query 48723 TATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTT 48782 | |||||||||||| |||||||| || ||| |||| ||||| ||| |||| | ||| Sbjct 50358 TGTTGAGGTCTTTCCACAATTTTTCCATCTATCTTCATTAGATAAGATCTTTCAAGGGTT 50299 Query 48783 TTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATTTA--TTC 48840 ||||||||||||||| || | |||| ||| || || || | |||||||| ||| Sbjct 50298 TTAAAACCAAAATAGGAATAATCATAGTCTCTATGATAAACTATAGCTGAATTTAATTTC 50239 Query 48841 TT 48842 || Sbjct 50238 TT 50237 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 48931 TTGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGGAT 48990 |||||||||| || |||||||||| | |||||||||||||| |||||||||||||||| Sbjct 49460 TTGTTTCTTTGTGGAGATTAGATACAACAATTCTAGCAGCTAAAATAGCATAATCTGGAT 49401 Query 48991 GAATTGTTGTACATGTACTAGATATTTCTGCTGCTAATATATCTAATTCTTTAGTAGTTA 49050 | ||| || || | || ||||| || ||||| |||||| ||| |||| |||| Sbjct 49400 GTCGTGTAGTCATTGAAGCAGCAATTTCCGCAGCTAAGTTATCTAGTTCAATAGTTGTTA 49341 Query 49051 CACCTGTATATATTCCTTGAATAACTTT 49078 | || | ||||||||| | ||||||||| Sbjct 49340 CTCCAGCATATATTCCATTAATAACTTT 49313 Score = 118 bits (130), Expect = 1e-21 Identities = 177/245 (72%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 46977 TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTC 47036 || |||||||| ||||||| ||| | | |||| |||||||| ||||| ||||| Sbjct 52175 TCAACAGTAAATTTAATTGCGTTAGCACCAGGCTTTGAACGTAAATAGTACATTCCAGTT 52116 Query 47037 TTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCT 47096 || | |||| |||||||||| || |||| ||| || | | | | | || ||| Sbjct 52115 TTGAGACCTTTCTTCCATCCATAAAAGTGCAAACTTGTCAGACGACCAAAGTTTGGCTCT 52056 Query 47097 GAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATA 47156 | ||| ||||| ||||| ||||| ||||||||||| ||||||| |||||||||||| Sbjct 52055 GCCATAAATATATTGAGAGACTGACTTTGATCAATAAAGGCACCTCGATCAGCTGCCATG 51996 Query 47157 TCTAAAATAACCCTTT-GTGG-TATCTCCCATACTGTTTTATAAA-TTTGTTTAATGTCT 47213 || || || ||| ||| || |||||| |||||||||||| | | ||||| | | Sbjct 51995 TC--AACCAAGGATTTCATGGACATTTCCCATGCTGTTTTATAAAGTCTCTTTAA-ATGT 51939 Query 47214 TCTGG 47218 ||||| Sbjct 51938 TCTGG 51934 >seq1531 Length=18023 Score = 154 bits (170), Expect = 2e-32 Identities = 150/193 (78%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284 ||||||| ||||| || || ||||| || |||||||| |||||||||||||| ||||| Sbjct 8606 TCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCA 8665 Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCG 19344 || |||||||| ||||| |||| || || | ||||||||| | ||| | ||| Sbjct 8666 ATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCATTGTACTTCATTTGCAAAACATTCA 8725 Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 |||| ||||||||||| || ||||||||||| ||||| ||||| |||| ||| ||| Sbjct 8726 ACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATATA 8785 Query 19405 AAATGTTTTTCAT 19417 |||||| | |||| Sbjct 8786 AAATGTCTCTCAT 8798 >seq1530 Length=18023 Score = 154 bits (170), Expect = 2e-32 Identities = 150/193 (78%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284 ||||||| ||||| || || ||||| || |||||||| |||||||||||||| ||||| Sbjct 8606 TCTTTAATATATGTTTCAATTAATAAGCTATACATTTCAGAATGAATATTTTCAATAGCA 8665 Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCG 19344 || |||||||| ||||| |||| || || | ||||||||| | ||| | ||| Sbjct 8666 ATTTGAAATCCATAAAAGAATCTAGCCTCAGGCCATTGTACTTCATTTGCAAAACATTCA 8725 Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 |||| ||||||||||| || ||||||||||| ||||| ||||| |||| ||| ||| Sbjct 8726 ACCAGGTTTTCATTAACAATACCATCACTAGCAGCAAAGAATGCCAATATATGGGATATA 8785 Query 19405 AAATGTTTTTCAT 19417 |||||| | |||| Sbjct 8786 AAATGTCTCTCAT 8798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562097297848680